barSeed - Barley Seed Development Database

Probe CUST_15957_PI390587928

Source Contig U35_4758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15957_PI390587928	Hv_44K_v2	TGGCTGAAATGATAATCAACAGAGCGAAGGTCATGTATTTGTGCTAATGCACTTAAAAAA	1255	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375083	2708	9e-22	2512 - 2566	100	55 / 55	plus	ABC15974 ABC19459
MLOC	MLOC_20204.1	1979	9e-22	1012 - 1066	100	55 / 55	plus	ABC15974 ABC19459
MLOC	MLOC_20204.2	1656	9e-22	899 - 953	100	55 / 55	plus	ABC15974 ABC19459
JLOC1	JLOC1_14012.1	1034	5e-22	709 - 763	100	55 / 55	plus
Harvest35	U35_4758	1326	3e-25	1256 - 1315	100	60 / 60	plus

Contig Sequence (1326 bp)

>U35_4758 1326 Hv_44K_v2
TGATGCAGCCAAAATGTGCGATCTACTGAAAAGCAAGCAAAAGAAAGGCGAGAATCAAGG
GAGGGTCGTGATAATGTCCTTGAAAATCTTAATGATAGACAGAAGCGGATCAAAGCCATT
GCCGAATCCTTCAAAGCCGCTAAATCACGCCCTGTCCACCAGACTAAACGAGGGATGGAA
CCAGAGTTTGTTCTCCCTTTGGTACCCGATTTTGATAGTTATAATGATCCATTTGTTATG
GTGAATTTTGATGGAGATCCTACAGCTGATTCAGAGCAGTACAACAAGCTAGAGAGATCT
GTACATGATGAATGCGAATCCCAGGCTCTAATGAAAAGTTTTCAAGTCAGTGGTTCAGAC
CCTGCAAAACAAGAGAAATTTCTGGCATATATGGCTCCAGCACCCCACGAGCTTGTCAAG
GACTTGGATGATGAAAATGAAGACTTCCAGTACTCCTGGATTCGGGAATATCACTGGGAA
GTAAGGGGGGATGACAAACAAGATCCAACGACCTACCTTGTCTCATTTGATGATGATGAT
GCAAAATATTTGCCTCTTCCTACCAAATTAGTATTGCAGAAGAAGAAAGCTAAAGAGGGG
AGATCTGGGGATGAAATCGAGCATTTTCCAGTGCCTTCTAGAATTACTGTGAGCAGGACA
GCACATGGTGATGAGATGGAGCACGGAGAATCATCCAGCATGCCTGGGAATTTAAAGCGA
CAAAGATCTTCTGTTGATGATGATCTTGATGAGCATCCGAGGCATTTTCATGTAGAAGAT
ATGGGGCAGTATAGTGAAGAAGACTATTCTGATTGATCAATTAGATATGGAAGGATCGTC
ATTTTCTTGCACCGTCGAATTTCATGGCCACATATGAATCTGTGAAGATCTCATATGCAT
TTGCTTTGGTGCCTCCATAAGTAGTAATAGGGTGCAGGGTTGATGAAAGAACATGCTTGA
GTGCATTCAGGCAATAGCAGATTTTGAAGTGCAGAGTGGGCAAAGCAAGGCAGAGTGTAA
CTGGACTTTAAGACGGCAAAGCAAGGCAGAGTGTAACTGGATCTTAAGACTGGTCTCAAA
AGTGATGATAGAAGGTCTCATCATCATGTAAAACAAAGTCTCTGTAGTCTTGGGAGTGAT
TCTCCACTGCTGTTTTGATGATATAGGCAACACTTTTTCCCATTTGATTGTGTAAGTACA
GCAATTTATTTATGTCAGGATATGAGACAGCTGTGCATCATAACTGTTTCTTTTCTGGCT
GAAATGATAATCAACAGAGCGAAGGTCATGTATTTGTGCTAATGCACTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_4758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06070.1	452	1e-156	protein\|ELF7, putative, expressed
Brachypodium v1_2	Bradi3g16550.1	451	3e-164
Arabidopsis v10	AT1G79730.1	589	1e-80	\| Symbols: ELF7 \| hydroxyproline-rich glycoprotein family protein \| chr1:30000743-30003969 REVERSE LENGTH=589