barSeed - Barley Seed Development Database

Probe CUST_15953_PI390587928

Source Contig U35_4762

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15953_PI390587928	Hv_44K_v2	CGAACAGACTATTGATAGTACCTACTGTGACATGTTTTGAGCAATGAATTTTGATCAGGC	810	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.774	1.544	1.111	0.854	0.390	0.485
Raw	9599.913	12827.043	8286.140	9903.583	1614.693	2181.243

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249886.1	2133	2e-24	2062 - 2121	100	60 / 60	plus	ABC13058
MLOC	MLOC_2053.1	964	2e-24	904 - 963	100	60 / 60	plus	ABC13058
JLOC1	JLOC1_1240.1	944	8e-25	810 - 869	100	60 / 60	plus
Harvest21	ABC13059	897	3e-25	811 - 870	100	60 / 60	plus
Harvest21	ABC13058	589	3e-25	18 - 77	100	60 / 60	minus	ABC13058
Harvest35	U35_4762	892	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (892 bp)

>U35_4762 892 Hv_44K_v2
GCAAGAATGTAGCGACTGTGGAAAGAAATTAATGTGGGCGGGCCAATATATTCCGCTCCT
ATTCATGATCAAGATTGGGTACTTTCTACGCTGACAGATGTTAGGCCAATGAAGGATAGA
TATCCTGCATACAACAAAATTACTTCAGTTCTAACTACTGTATCAGAGGAATTGCATGAC
ATTCCATTATTTTTTAGTCTCCATAACATATCTGGGACTGTGAAGTGCACATCACCATCT
GCAGTTATGTTCCGGTCAGCAGTTATAAATGCAGGATATCAGATATCAAGCAGTCACTGT
AACCCGCTCGGGCTGAAGTCTGATGCCCCGTGGGATGTTATTTGGGACATCATGCGCTGC
TGGGTGAAAAACCATCCAATCAAGGAACAGCCGCGTGATTCTGCAGGCACTGCAATCCTT
TCTAAATCTCCACAGCTAGAAGCAAATTTCTCTAGAGCAGTTGCTGCCCTCAGCAAGGCT
CAGATGAAGAAGGTGAATCGGTTCCTTCCAAACCCAGAAAGTCACTGGGGTCCAAAGGTC
AGGGCAGGTCGGAGAATTACAAACAAGCATATCTCCCTGTTAGGCGCAGAGGCTACCAAT
GAAGCTATCAGCCGCCAAGATGGAAATGGAGCGGTGACAGATAAGCCAGGTTCAGATACA
GGAGCGACTGTCACAGACGAAGAGAATGAACCTTCAACCAAACGCCAGAAAACCGATGAT
GGTGAACCCGCCAGCGAACCTTGATTGACATTGTCATCGTAACTTTTTGTTCGTCAATCT
TGATATCACTTGTTGTTTCTTTCTTGTGAGCGAACAGACTATTGATAGTACCTACTGTGA
CATGTTTTGAGCAATGAATTTTGATCAGGCAATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57280.1	609	2e-123	protein\|N-dimethylguanosine tRNA methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g66740.1	602	1e-148
Arabidopsis v10	AT5G15810.1	691	4e-94	N2,N2-dimethylguanosine tRNA methyltransferase \| chr5:5157798-5161121 FORWARD LENGTH=691