barSeed - Barley Seed Development Database

Probe CUST_15950_PI390587928

Source Contig U35_4765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15950_PI390587928	Hv_44K_v2	TCACAATATTTTGCTCTCCGCTCTACCTCTTGTGTAAGAAACTTGGCCTACTCGGCTACT	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367621	1384	2e-24	1272 - 1331	100	60 / 60	plus	ABC15957 ABC52618
MLOC	MLOC_22166.1	893	2e-24	135 - 194	100	60 / 60	minus	ABC15957 ABC52618
JLOC1	JLOC1_15361.1	972	8e-25	135 - 194	100	60 / 60	minus
Harvest21	ABC52618	203	3e-25	69 - 128	100	60 / 60	plus	ABC52618
Harvest21	ABC15957	1397	3e-25	1268 - 1327	100	60 / 60	plus	ABC15957
Harvest35	U35_4765	482	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_4765 482 Hv_44K_v2
GGGCCTCTTCTTGGATGGTTACACGTATCTCGAGGACTTCATGCCGCTCCCGTACGGTCT
CGACCATTGATCGGCCGGGCCGTGGGTCGGGAGGATCGATCGGCTGGCTCCTCGCGTATG
TAAAGTATATGCAAATAATGGCTTCGTGGATCCTCCATCTTCCTGAGCTGCGCGTCCTAG
TTTAGTTTGTACATTTTTATGTCTATGTATCATGTCAGTTAGAAATCTGCGTGTTTGCTA
TTGACGTACACGCCCGTGTACGTACGTAGATTATGGAGTATGTTAGTAGCCTTAGCGGGG
CCGAGGTTTTTTTGCCACTCCCAAGTGACTGGGAGGTGAACAGAAAACCTCACAATATTT
TGCTCTCCGCTCTACCTCTTGTGTAAGAAACTTGGCCTACTCGGCTACTCGACCGCGGTG
GCGCCTCAGATGAAGGTGTGGTACAAGCTTAAATCTTTGTGCTGCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_4765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None