barSeed - Barley Seed Development Database

Probe CUST_15949_PI390587928

Source Contig U35_4766

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15949_PI390587928	Hv_44K_v2	GCCACTCCCAAGTGACTGGGAGGTGAACAGAAAACCTCACAATATTTTGCTCTCAAAAAA	1236	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.582	1.701	0.996	1.073	0.813	1.536
Raw	19.993	95.539	44.273	73.602	19.665	40.873

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367621	1384	3e-21	1236 - 1289	100	54 / 54	plus	ABC15957 ABC52618
MLOC	MLOC_22166.1	893	3e-21	177 - 230	100	54 / 54	minus	ABC15957 ABC52618
JLOC1	JLOC1_15361.1	972	2e-21	177 - 230	100	54 / 54	minus
Harvest21	ABC15957	1397	6e-22	1232 - 1285	100	54 / 54	plus	ABC15957
Harvest35	U35_4766	1307	3e-25	1237 - 1296	100	60 / 60	plus
Harvest35	U35_4765	482	6e-22	314 - 367	100	54 / 54	plus

Contig Sequence (1307 bp)

>U35_4766 1307 Hv_44K_v2
AAGCTCCCCCTCTGCCCTCGCCTTGCTGCTCTGTGGTGCTGTGCTGTGCTGTGCTGTGCG
AGCTAGGTGGAGCAGGAGTGAGCTCGAGTTCACGTGCTCGTGCTTGGATCGATCGATGGC
CATGGCGCCGTACGAGCAGGTGGTGGACGACCTGGCCAAGGGGCAGGAGTTCGCGACGCA
GCTGCAGGGCCTCCTCCGGGACTCCCCCAAGGCCGGCCTCATCATGGACCAGATCCTCCA
CACCTTCTCCCGCGCCATCCACGCCGCCAAGGCCGCGGCCGCCGCCAGCGCCAGCGCCAG
CAGCGGGAGCGAGGTCACCGACGGCGCAACCAGCGGCGGGAAGAGGAAGTCCGCCGCCGG
TGGAGGGCCGCGCAAGGCCTGCCGGACGAGGACCCATGATTCGTCCGTAGTCACCAAGAA
GATGAAGAGCTTGGAGGACGGGCAGACATGGCGCAAGTACGGGCAGAAGGAGATACAGAA
CTCCAAGCACTCCAAGGCCTACTTCCGGTGCACGCACAAGTACGACCAGCAGTGCCCGGC
GCGGCGGCAGGCCCAGCGCTGCGACGAAGACCCGGACACGTACAGGGTCACCTACATCGG
CGTGCACACCTGCCAGGACCCCGCCGCCGCCGTAGCGCCGCATGCTCCTCATCTGACCGG
CGGTTGCCACCTCATCAGCTTCGCGCCCGCCGCCGCTCACGTCCTACCCACCACCAGCAC
GACCACGACGAACACCAACCTGGTCGACCAGGACGCCGCGGCGAGGGGGTCCGGCCTGCG
GCTGCCGGGCCTGAAGCTTGAGGGCGGCGACCTGGAGGAGGTGCTGAGCAGCCGCACCCC
CGGGAGCTCCGCGCTGCACGGCGCGGCGACCTGGCCCGACCAGGGCGACGTGACGTCCAC
CCTGCAGTACGGCCTCGGCCAGGGAGACCTCTTCTTGGATGGTTACACGTATCTCGAGGA
CTTCATGCCGCTCCCGTACGGTCTCGACCATTGATCGGCCGAGCCGTGGGTCGGGAGGAT
CGATCGGCTGGCTCCTCGCGTATGTAAAGTATATGCAAATAATGGCTGCGTGGATCCTCC
ATCTTCCTGAGCTGCGCGTCCTAGTTTAGTCTGTACATTTTTATGTCTATGTATCATGTC
AGTTAGAAATCTGCGTGTTTGCTATTGAGCTACACGCCTGTGTACGTACGTAGATTATGG
AGTATGTTAGTAGCCTTAGCGGGGCCGAGGTTTTTTGCCACTCCCAAGTGACTGGGAGGT
GAACAGAAAACCTCACAATATTTTGCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4766 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None