barSeed - Barley Seed Development Database

Probe CUST_15933_PI390587928

Source Contig U35_4782

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15933_PI390587928	Hv_44K_v2	CAAGCGGAATTCTCTTGTAAAATGTGTTATACTCGGAAATGACCTATTTCATTTGTCTTG	1426	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.459	1.538	1.204	0.871	0.383	0.424
Raw	2085.480	3492.998	2388.947	2726.185	412.575	502.792

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50316.2	917	7e-23	705 - 764	98	59 / 60	plus	ABC11429
MLOC	MLOC_50316.1	1615	7e-23	1403 - 1462	98	59 / 60	plus	ABC11429
JLOC1	JLOC1_32116.1	1430	4e-23	1331 - 1390	98	59 / 60	plus
Harvest21	ABC11429	1517	1e-23	1427 - 1486	98	59 / 60	plus	ABC11429
Harvest35	U35_4782	1517	3e-25	1427 - 1486	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_4782 1517 Hv_44K_v2
GGGAGTCTACGATGACGAGGCTGGTGGTGGCTAGGTCAGTCGCGCGGAGCGGGAGCAGGT
GGGAGGGAGAGTGGAGCCATCCTCCTTCTCATATGCCATTTCTTGTCGAATCAACTAGCG
CGCGAGGCAGTACAGCGCGACGCTCACATGTGCGATGGAGCAAATGTTGTGCTGGCATCA
TGCATGGTCACAGTCACATGCACGTGGGGCTGATAGCTGAATCGGGTGGCTGAATCGGGT
GGCACGCATAGTGTTGCGAAGAATGACCGGAGAACATTAGTTCCATATTATTACAGTTCT
TGTCAATGTATCTTCTATGGTATTTGTGCATGAGAAGCATCTATATGATAATTTCAGAAA
TTGCAGGAGAAGCGGTGAAGAGAAATGTCATAATCTGGGGAAATGCCATATAAGGCTTTT
ACCGGAGAAGCATCTATGCTAATTGCTAGTCAATTACTGTTTCAGAACCAAAAGAGTCTA
TTTTATTCATTCACTTTCTGTTCATTTAATCACAGGTTCTTAAAAGGATAGCTTCTTACG
CTAAAAGCAGCGCTGAACTGTTAACAAATCTTATCGTCTATGGTCAATCAGGCCAATATA
CATGGGAGTGCCTCTTCCGAACACCTTTAAGCAATTATGACGCTGTTATACTCCTCCATA
AAGAGAAGCTTTGCCGTCCTCACCATCTTCTTTTTCCTGCTGAGATTCCTAACGGTAAGT
TGGTAATCCAGGGCAAACCAAGCAGTGATTTCCACCCTTATATGCCACTCAGTAGAAGTG
TTGTGAGAAGCTTGCATGACACAAGAGATAAACTTTTGGTGAATTTTGACCCTACCGCAT
ACTTCTTGCGAGACTTGAAGTGTGCATTCCCCATGACCTTCAAACTGTGGCACGATTCGA
TTGGTGGGGACGCAATTGGTCTTACATGGGAGAGCCCAAAGAAGCGTACCAGAGATGAGG
TTGATGAAGGCATGCCGGATCCAACGTCTATACTCAAGGAGGTTGGAGATGTGGGTAAAG
GGTTGGTGAGGAGTGTACATCTCCTGAAAGCACCAAAGCTTGAGTAAGCTGTGCGTGAAG
GAGTTCGCTGGTGCCCAGGAGAGGAGTCCTGGCCGATTTTCTGCCAATGGTAAGAGAAAG
CAACACCCAGACCGAGTGGGCAACATGTTATCTTCAGCAAAGCAATGTATAAAGTGGTAA
TGATATCATGTGGTTGTAACTCCAATTGGACGATCAAGTCAGCAAAAATCTCTATCCAAT
TTTTGACTCCCGAGTTCCAGAAAAGTATAGCGATGTAGTTCTGTTTCCTGGTCATTTCAA
CAGGAAGAAATCGGCTGCAACGCTGTGTTGATTTGAGACAAGATGGAATCAAAATTGAGC
AGCTACTAAACGTAGGGTTACATGAAAGTTGCATTTGTCTGTATGCCAAGCGGAATTCTC
TTGTAAAATGTGTTATACTCGGAAATGACCTATTTCATTTGTCTTGTAAAATTCTTCTTT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_4782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06910.1	1037	3e-95	protein\|nucleolar protein family 6, putative, expressed
Brachypodium v1_2	Bradi4g41717.1	987	7e-101
Arabidopsis v10	None