barSeed - Barley Seed Development Database

Probe CUST_15929_PI390587928

Source Contig U35_4786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15929_PI390587928	Hv_44K_v2	AAGAAGATGCCGCAGATGCTCCTCGACTACAAGAAACGCAGATGGGATAAGAAGATGAAA	195	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354924	890	2e-24	327 - 386	100	60 / 60	plus	ABC12608 ABC12609
Harvest21	ABC12608	505	3e-25	17 - 76	100	60 / 60	plus	ABC12608
Harvest35	U35_4786	684	3e-25	196 - 255	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_4786 684 Hv_44K_v2
GGGTACTGGGAGCTGGGGGCGTGGAAGCCGCTGGGGATCAGCGGCCGGCAGCGCGCGCGG
CTGCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCCGCGGCGAG
ATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGCGCGCCAAC
ACCGTCGAGCTGATGAAGAAGATGCCGCAGATGCTCCTCGACTACAAGAAACGCAGATGG
GATAAGAAGATGAAAGAGGAGGAGGCGGCGGCGGCAAAGGCCACTTAGGGGACTGGCCTG
CTGGTGGGGACTCTACCGCTTGCTGCAGCAATCGTGAAGGAACTCATAATATATTCTGCA
TACCATGAAACTAGTCTCCCTTTTTGTTTGATGATGAGGCCAAGCTGTTGATCAGGGATG
CTGCTCCTCCTGAATAAGGTCGAAGGGAGTGTAATGTAGGAACCTCTTCATAGGGTGATT
GGCTTGTGGTTTTTTTGCCTTGCTGGTTTCCGGCTCTCCTGACACCTATGACAATTTGTA
GTGCAGATTTTTTTTTATTATCCTAAAACATTGGTCATCACCTAATCAAGATTCTAGCTT
GGCCCAACCTGCACTGAACTCCACCTGTTTGCTGGAACAGATTAATAATGAGTGTGTGTG
TTAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02410.1	129	9e-55	protein\|expressed protein
Brachypodium v1_2	Bradi2g37410.1	138	2e-56
Arabidopsis v10	None