barSeed - Barley Seed Development Database

Probe CUST_15927_PI390587928

Source Contig U35_4788

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15927_PI390587928	Hv_44K_v2	TTTCTTTGCACTCGTTGATTCTTCTACAGTGAGACTTGATGATTAGTGTGAAAATGGAAT	859	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.168	0.219	0.774	1.899	1.192	1.964
Raw	19.156	42.727	127.942	528.367	102.735	189.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52702.1	677	2e-24	1 - 60	100	60 / 60	minus	ABC14289 ABC31872
MLOC	AK370029	1032	7e-23	923 - 982	98	59 / 60	plus	ABC14289 ABC31872
JLOC1	JLOC1_33789.1	802	8e-25	621 - 680	100	60 / 60	plus
Harvest21	ABC14289	953	3e-25	35 - 94	100	60 / 60	minus	ABC14289
Harvest21	ABC31872	415	1e-23	316 - 375	98	59 / 60	plus	ABC31872
Harvest35	U35_4788	959	3e-25	860 - 919	100	60 / 60	plus

Contig Sequence (959 bp)

>U35_4788 959 Hv_44K_v2
GGCTGCAGGCGGAAACACCACGGGCAGCAGCAAAGCAGTAGTACTAGTGGTTGCAGCAGA
GTCCAGAGAGAAATAAGAAACCAGATGAGACGGCTCGCCGGCGGCGCCGCCCTGCTCCTC
CTCCTGGCCTTCACCGCCAGGCCTGCCGCCGCCGACTTCTTCTCCCCTCTCAGTCCCCTC
CTCGCCCCCGTCATGGTTTCGCTATGCAAGGCGGTGGCCTGCGGGAAGGGGAACTGCACG
GTGACGACGGGGCTGCCGGGGTACAGGTGCGACTGCGAGCCCGGGTGGACGCAGATGCAC
GTCGGCGACAGCCTCAGGTTCCTGCCCTGCGTCATCCCCAACTGTACCATTGATCGTTCA
TGTTCTAACGACACTTCAGCCCCATCACCGGCGCCTTCACCCAAAAATGTCTCCATCTCG
GCAAACCCTTGTGACTTGGCTTATTGTGGTTCCGGGGGCACATGCAAGAACGCCACGGGG
CTCAGCTACCACTGCGAGTGCAAGGAGGGCTTCAGCAATGTTTTGAACATGACCACAATG
CCTTGTTTTCAAGACTGTTCTTATGGAGCGGATTGCGCAGCCATCGGGATCTTACCATCC
ACAAACTCCACTTCTACAGCACAACCAGCTGGCTCCGCAAGCGTTTCAAACAATTGCAAT
GCACCTGTTCCAGGATCTGTTTTGTGGCAAATTCTACTTCCTCTGCTGATGTTAGCCTCC
CTTGCTATGGGTCAGGCGACATAAACAGAGGATGGTTTATACCACGGTACAGCACTAGAG
AGAGTATTTGTTCACGGACAGGGTAGAGCTTTTAGCCTGTTAGAGATGTACGTTGTTGGT
GTATGTCGCTGCTGCATTATTTCTTTGCACTCGTTGATTCTTCTACAGTGAGACTTGATG
ATTAGTGTGAAAATGGAATAAAATATAATGTTAAATAAACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06580.4	239	1e-96	protein\|MTN26L2 - MtN26 family protein precursor, expressed
Brachypodium v1_2	Bradi1g74400.1	224	1e-114
Arabidopsis v10	None