barSeed - Barley Seed Development Database

Probe CUST_15926_PI390587928

Source Contig U35_4789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15926_PI390587928	Hv_44K_v2	AAGCAGTAGCACTAGTGGTTGCAGCAGAGTCCAGAGAGAAATCAAGAAACCAAGATGAGA	74	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13338.1	361	2e-24	205 - 264	100	60 / 60	minus	ABC14289
MLOC	AK362785	578	7e-23	42 - 101	98	59 / 60	plus	ABC14289
MLOC	AK370029	1032	7e-23	94 - 153	98	59 / 60	plus	ABC14289 ABC31872
JLOC1	JLOC1_9016.1	375	8e-25	112 - 171	100	60 / 60	plus
Harvest21	ABC14288	572	3e-25	75 - 134	100	60 / 60	plus
Harvest35	U35_4789	573	3e-25	75 - 134	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_4789 573 Hv_44K_v2
TTAAGCTCCATCATCACAACCGCCCACACACACGTGGGGGGCGCAGAGACCGGAAACACC
AACGGGCAGCAGCAAAGCAGTAGCACTAGTGGTTGCAGCAGAGTCCAGAGAGAAATCAAG
AAACCAAGATGAGACGGCTCGCCGGCGGCGCCGCCCTGCTCCTCTTCCTCCTCCTCCTGG
CCATCACCGCCAGGCCTGCCGCCGCCGACTTCTTCTCCCCTCTCAGCCCCCTCCTCGCCC
CCGTCATGGGGTCGCTATGCAAGGCGGTGGCCTGCGGGAAGGGGAACTGCACGGTGACGA
CGGGGCTGCCGGGGTACAGGTGCGACTGCGAGCCCGGGTGGACGCAGATGCACGTCGGCG
ACAGCCTCAGGTTCCTGCCCTGCGTCATCCCCAACTGTACCATTGATCGGTCATGTTCTA
ACGACACTTCAGCCCCATCACCGGCGCCTTCACCCAAAAATGTCTCCATCTCGGCAAACC
CTTGTGACTTGGCTTATTGTGGTTCCGGGGGCACATGCAAGAACGCCACGGGGCTCAGCT
ACCACTGCGAGTGCAAGGAGGGCTTCAGCAATG

Homology of Contig U35_4789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g06580.2	226	3e-72	protein\|MTN26L2 - MtN26 family protein precursor, expressed
Brachypodium v1_2	Bradi1g74400.1	224	2e-83
Arabidopsis v10	None