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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15922_PI390587928Hv_44K_v2CCGATATGAATCATTTCTCTATGTGAATGCCTTACCGCCTTGTGCTTCTTGGCCAAAAAA626GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4161.7051.0730.8310.4580.445
Raw 1054.3451962.4381079.4221325.549254.576272.650



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_6818.525029e-221812 - 186610055 / 55minus ABC14703
MLOCMLOC_6818.644489e-223616 - 367010055 / 55minus ABC12263 ABC14703
MLOCMLOC_6818.252159e-224281 - 433510055 / 55minus ABC12263 ABC14703
JLOC1JLOC1_4462.128295e-22637 - 69110055 / 55plus
Harvest35U35_47936973e-25627 - 68610060 / 60plus



Contig Sequence (697 bp)

>U35_4793 697 Hv_44K_v2
CCGGGAATCGGCATTACGGGCGGGGAGTAGGAATAGCCTTCGCCAGTCGAATTCCTCTCT
CCCTGCCCCCCAAAACCGAACTAGCGGCGGCGGCGAAGTGGTTGGTGGAGAGGAGATGCT
GCGATTCCCGGCGCTGATGCGGCAGTGGCCGTCGCCGCCGCTGATTCCGGCGTCCACACT
CCTCCCCGTGCCCGCAACTACCCAGGAGGACGAGCTCCTCCTCGCCATGGCCGAGTCCGA
CCTCGAAGACAAGCTGAACGCGATCCGCAAGACCAACAGCAACCTGGTGATCATAGGCAA
GCCCACCAACGACGTGAAGGAGGAGTACGACGCGGAGGTGGAAGAGGACGACGTCGACAA
CGTTGACGAATCCGACGGGGACGATTTCGACCAAGAAACCGGCTGAGCCGTCCGGCTCCC
CCAGGCTCCAGTCCCAATACGTTGGCCTTTCTGCAAAGCAATCTGTACGCTTGTTGCAGC
CCGAGATCCCCAATTATCTCTAGTTGTTACTAGATCAATTTGTGCAAGCTATCATACTTT
ACTTTGCTACATGGTGTTTCGACGATTCGGGGGGTTTACCTACCCTTGGATTAGCTCGTT
AATGCTGTCAGGTATTTATCGAAACACCGATATGAATCATTTCTCTATGTGAATGCCTTA
CCGCCTTGTGCTTCTTGGCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_4793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None