barSeed - Barley Seed Development Database

Probe CUST_15912_PI390587928

Source Contig U35_45632

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15912_PI390587928	Hv_44K_v2	TGTCCTCTACTAAACAAAATTGTCTCTGCAAATCATAAGCTGGTTTGCCTGCCTAAAAAA	11	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.941	1.656	0.831	1.268	0.723	0.606
Raw	29.270	41.397	17.203	41.382	7.349	7.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC44740	524	3e-25	12 - 71	100	60 / 60	minus	ABC44740
Harvest35	U35_45632	524	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (524 bp)

>U35_45632 524 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGGCAGGCAAACCAGCTTATGATTTGCAGAGACAATTTTGTTT
AGTAGAGGACAGATTTACAGTATCAGTATGGCTATTCTAGATGTGTAAGTAGAGTATATT
TTTCTTCACATTCTATACATTCTATGTAAATATCTGATGAAACCTGAAGGAGTCCTGTCT
GGCTCAGTTCAGGTGGCCTCCGACACCCGGGTCTCCTGGGCGGCAGCTATCTCCTTGACG
TCTCCGTCCCTGGAGAGGACGCACGTCGACGTGACCGCGCTGCCGTGGCCCAGCAGCCAC
CCGACCTCGCACACCACGTCGCCGTCGCCGCTCACCTTGAGCGAGCTCCACAGCTGCTTT
GGCAGCAGCGTCACGCCGCCGGCGCCGTCCCTCGCCGTCCTCCGCGGCTCGTGGTCCGGC
TCCAGCCCCGCCAACTTGCCCGTGACGGGGTCCAGCGCGCCGGAGGACCTGGAGGTGCTC
TCCCACTGCCCCGCCACTGCCGACGCGGCGAGCCTCTCCCCGGC

Homology of Contig U35_45632 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None