barSeed - Barley Seed Development Database

Probe CUST_158_PI390587928

Source Contig U35_19596

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_158_PI390587928	Hv_44K_v2	GTATTCTTTTCTTCTCACAGAGAGAAAGAAAAGACAGGCCGAGATGAAGCTCGTGTGGTG	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19364.1	587	2e-24	310 - 369	100	60 / 60	minus	ABC11450 ABC29700
Harvest21	ABC44159	284	3e-25	30 - 89	100	60 / 60	plus
Harvest21	ABC11451	553	3e-25	30 - 89	100	60 / 60	plus
Harvest35	U35_19596	555	3e-25	30 - 89	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_19596 555 Hv_44K_v2
GTTCGCTTTCTCCCTCCCAAAGTACTCCAGTATTCTTTTCTTCTCACAGAGAGAAAGAAA
AGACAGGCCGAGATGAAGCTCGTGTGGTGCCCGGAGACCGCGTCCCAGGCCTTCATCGCC
GGCGTCAGCGCCCTGTCAGAATCCGAGCACAGCCCCGCGGGGTCGGCGGGCGTTGCCGAG
CTCGTCTCCGCCATGGCCGGGGGATGGAACGCGCAGCTCGTCGTCGAGGCGCCGGAGCTC
TCGGCTCCCGACTCGGCCTCCACGAGCCTCGCCCTCGCCGCCGCCGCCGGGCGCACAGGA
GGTCGCTACGCGCGCGTGCTCCCGGACAAGGACGCGGACCGAGCCATGGCGGAGCTGGCG
GGCGTGGACTTCTTGGTTGTCGACGCGCGGAGGCGGGACGCCACGGCCGTGCTGGCGGCG
GCCAGGCCTGGGCCGAGAGGGATGGTGGTAGTGCGCCACGGCGACGGGAGGCGGCGTGGC
ACGAAGGCGCTCGAAGCGTCCATGGCGGCAGGGACGAGGGTAGTGCGGTCCGTGTACCTG
CCGGTCGACAAGGGC

Homology of Contig U35_19596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None