barSeed - Barley Seed Development Database

Probe CUST_15898_PI390587928

Source Contig U35_21680

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15898_PI390587928	Hv_44K_v2	TGGTGCATTGAGCAAGGAAAGGAATTCCAAGATCAGTACGAGGTCGGCAAAGAGAAAAAA	1090	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.117	1.423	1.344	0.866	0.373	0.222
Raw	1377.194	2641.015	2231.547	2128.067	343.250	223.890

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77192.3	2739	3e-21	314 - 367	100	54 / 54	plus	None
MLOC	MLOC_77192.2	3152	3e-21	829 - 882	100	54 / 54	plus	None
MLOC	MLOC_77192.1	4329	3e-21	1855 - 1908	100	54 / 54	plus	None
JLOC1	JLOC1_51485.2	3304	2e-21	1304 - 1357	100	54 / 54	plus
JLOC1	JLOC1_51485.1	4217	2e-21	1855 - 1908	100	54 / 54	plus
Harvest35	U35_21680	1161	3e-25	1091 - 1150	100	60 / 60	plus

Contig Sequence (1161 bp)

>U35_21680 1161 Hv_44K_v2
GGGACACGTTCCGCGCCAAGCCCTTCATCCACTACATTTCGGCGCTGGCGAGGACCCCGC
TGGCCGGCGCCGATCGTCTCGACCTTGCCACCGCCGTGGCGCAGCTCAGGTCCTTCAACC
GCTTGAGGTGTCCAATGGAGCTCCCTGAGTTTGTCATCTACCAGGGGATTGAGGACGTTG
CTGCTGAGGCTGAGGTGGCAGCAGCATCCCCGCACACAAAGAGGAAGAGGACGGAGAGGG
ATGCCGATGCTCCTGCCAAGGAGAAGAAATCGAGGCATGTCGAGGGCTCATCTCACAAGA
GAGATGCTGCTGCCGCAAGGGAACAAGAAGAGGCCATTGAGGATGCTCCGACCAAGGAGG
AGAAGAAATCGAGGAGGAGCTCGTCGCGCAAGAGAGATGCTGCAATTGAAGAAGAGGACA
GCCCTCCTATCCCCTCAGCCAGGAACTCCTCCAAAGATGCAGCCGATAAGGGAGGAGAAG
CCCCTTCAAACAAAGATGCTGCCATGGTTGAGGACAGCCCCATGCCCAGTAGCAAGCAAA
GCAAGTCGAAGAGAGCTAGCAAGAGTGCAGCAGAGAAAAAGAAGAAAGAAAACTCCAAAG
ACGCAGCAGATAAGGGCGAGTCACTACCAGAGGCAGAGCCTGCGAAAGAAGATGATATGA
ACGAGGACAGCTCTATGCCGAGCGTAGAGGCGGCAGATGATACACTGAGCAAGGGAAGGA
AGTCAAAAAGAGCTAGCAGGAGCTCAGCAAAGACAAAGAAGAAGGACACCTCCAAGGACG
GAGACAAGACAGAGTCTCTAACAGAGGCTGCAAAGGAAGTTGCCGAGAACGAGGACAGCC
CTATGCCCAGTGCAGAGGCGACAAATGATACAGTGAGCAAGAAAAAAAAGTCAAAGAACA
GTAAGAGTTCGGCAAAGACAAAGAAGAAAGATGCAGATGGTGCATTGAGCAAGGAAAGGA
ATTCCAAAATCAGTACGAGGTCGGCAAAGAAGAAGAAGAAAGATGCAGATAAGAAGGAGT
CTCTGCCAGAGCCTGTACAGGAAGGTGCTGAGAATGATGACAGCTCTATGCCCAGTGGAG
GGGCGACAGATGGTGCATTGAGCAAGGAAAGGAATTCCAAGATCAGTACGAGGTCGGCAA
AGAGAAAAAAAAAAAAAAAAG

Homology of Contig U35_21680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None