barSeed - Barley Seed Development Database

Probe CUST_15896_PI390587928

Source Contig U35_99

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15896_PI390587928	Hv_44K_v2	CAACTTCTGTTTGCCTGAGTAAGTGTTTGATGTTTACAGCCTGAGTAAGTGTTTGATGTT	1282	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.549	0.605	1.031	1.336	1.086	1.292
Raw	28841.733	48472.933	74733.833	140890.700	43189.900	55975.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12611.1	2002	8e-25	1454 - 1513	100	60 / 60	plus
Harvest21	ABC00149	1454	3e-25	1323 - 1382	100	60 / 60	plus	ABC00149
Harvest21	ABC00747	640	1e-23	414 - 473	98	59 / 60	plus
Harvest35	U35_286	1455	3e-25	1324 - 1383	100	60 / 60	plus
Harvest35	U35_99	1416	3e-25	1283 - 1342	100	60 / 60	plus

Contig Sequence (1416 bp)

>U35_99 1416 Hv_44K_v2
CTGAGGAATTCGGACGAGGGACCCTTCCCCCGTCCCAGCGAACCTCCCCACCACCATCTC
GCGTCGCGGCGTCAGTTCCACTCCTTCGCCATGGGCAAGATTAAGATCGGAATCAACGGT
TTTGGAAGGATCGGGAGGCTCGTCGCCAGGGTCGCACTCCAGAGCGACGATGTCGAGCTC
GTCGCCGTCAACGACCCTTTCATCACGACCGAGTACATGACGTACATGTTCAAGTACGAC
ACAGTTCACGGCCATTGGAAGCACAGTGACATCAAGCTCAAGGACGACAAGACGCTGCTC
TTTGGCGAGAAGCCAGTTACTGTCTTTGGCGTCAGGAACCCTGAGGAGATCCCGTGGGGT
GAGGCTGGTGCTGATTACGTTGTGGAGTCCACCGGTGTCTTCACTGACAAGGACAAGGCC
GCTGCTCACTTGAAGGGTGGTGCCAAGAAGGTTATCATCTCTGCCCCAAGCAAAGATGCC
CCTATGTTTGTGGTTGGTGTCAATGAGGACAAGTACACCTCGGATGTTAACATTGTCTCA
AATGCTAGCTGCACCACTAACTGCCTTGCTCCCCTAGCTAAGGTCATTAATGACAACTTT
GGTATTATTGAGGGTCTGATGACCACTGTTCATGCCATCACTGCCACACAGAAGACCGTT
GATGGTCCCTCAAGCAAGGACTGGAGAGGTGGCAGGGCCGCAAGCTTTAACATCATCCCC
AGCAGCACTGGTGCTGCCAAGGCTGTTGGTAAGGTTCTTCCTGAGCTGAATGGCAAGCTT
ACCGGTATGTCTTTCCGGGTTCCCACTGTGGATGTGTCAGTTGTTGATCTCACTGTTAGA
ACCGAGAAGGCTGCATCATATGATGACATCAAGAAGGCTATCAAGGCTGCTTCCGAGGGA
AAGCTCAAGGGTATCATGGGTTACGTTGAGGAAGATTTGGTCTCCACCGACTTCGTTGGT
GACAGCAGGTCCAGCATCTTTGATGCTAAGGCTGGAATTGCTCTGAACGACCATTTCGTC
AAGCTTGTCTCGTGGTATGACAACGAGTGGGGTTACAGCAACCGTGTTGTCGACCTGATC
CGCCACATGGCCAAGACCCAGTAGAGCGTTCTGCTTTCCTTGTGGCGCCTGGTCAGAGGT
GCCCCTTTGTCTATGGGAATAAATGTGGATGGTGTCGCTAGACGCCTGGTTCATGTTAGT
TGGACATGAGTTACCATCTGTTTTTCCGCACCGAGTTGCTAGTCAAGTACTCTTGATTTA
TGTAAATCGTTCAGTCCATTTACAACTTCTGTTTGCCTGAGTAAGTGTTTGATGTTTACA
GCCTGAGTAAGTGTTTGATGTTTACAAAAAAAAAAAAAAAAAAAAAAATTGTTTGAAATT
GTCGTTAGTTCAGATGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_99 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g03290.1	338	protein\|glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g14040.1	338
Arabidopsis v10	AT1G13440.1	338	\| Symbols: GAPC-2, GAPC2 \| glyceraldehyde-3-phosphate dehydrogenase C2 \| chr1:4608465-4610494 REVERSE LENGTH=338