- Probe CUST_15888_PI390587928
- Source Contig U35_33661
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15888_PI390587928 | Hv_44K_v2 | TAATTTGTTGTTCTTGTACTCTAGTGGATTCGCACGCGCGCGTGCATATTTTTGTTTCAC | 0 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.695 | 1.857 | 1.282 | 0.586 | 0.165 | 0.194 |
| Raw | 8754.333 | 8872.700 | 5522.517 | 4097.235 | 392.295 | 510.442 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_48113.1 | 905 | 8e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10962 | 546 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | ABC10962 |
| Harvest35 | U35_33661 | 368 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_19060 | 554 | 3e-25 | 413 - 472 | 100 | 60 / 60 | plus |
Contig Sequence (368 bp)
>U35_33661 368 Hv_44K_v2 GTGAAACAAAAATATGCACGCGCGCGTGCGAATCCACTAGAGTACAAGAACAACAAATTA ATGAATCCAAATCGAATCTCACACAACGAATCTCTCAAGAATCCACTAGCTATCGATCAA CGAACAAGAGAAAGATGAACAAAAGAATGTATAACCCTCTGCGCATAGACAGGCTCAGAA GAGCTTTTAACGGGAGGAGGCGTCCAACGGGTGGATGAGGTAGGTGAGCACCAGCGCCAC GATCATCAGAAGGTAGGCGACGCCCTGGTCGATCGAAGACGCTGCACGTATTGGCAAGAA AACAAGTGAGAAGAAATTTACAAGGAAAGAAGCAACTCAGAAGGGAAGACGCCACAGTCT GATGGCTC
Homology of Contig U35_33661 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |