barSeed - Barley Seed Development Database

Probe CUST_15886_PI390587928

Source Contig U35_19371

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15886_PI390587928	Hv_44K_v2	ATTGCTGCTCGCAAGCATTACACCGTCGATGTTGTTGTTGCTTGGTATGCCGTTAATCTA	1030	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.109	0.215	1.456	2.806	1.298	1.137
Raw	19.386	62.938	369.088	1143.829	182.003	171.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366205	1499	2e-24	974 - 1033	100	60 / 60	plus	ABC20371
MLOC	AK371380	2884	2e-24	2180 - 2239	100	60 / 60	plus	ABC20371
MLOC	MLOC_65121.1	1029	2e-24	484 - 543	100	60 / 60	minus	ABC20371
MLOC	MLOC_65121.2	1837	2e-24	482 - 541	100	60 / 60	minus	ABC20371
JLOC1	JLOC1_42830.2	1839	8e-25	1286 - 1345	100	60 / 60	plus
JLOC1	JLOC1_42830.1	1202	8e-25	649 - 708	100	60 / 60	plus
Harvest21	ABC20371	1062	3e-25	520 - 579	100	60 / 60	plus	ABC20371
Harvest35	U35_19371	1586	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1586 bp)

>U35_19371 1586 Hv_44K_v2
ATCATTATCTCGTTTCCTTCGATCTCTCTCTTCTCTTCTCCTCTCTTGAGCTCCCCCTGT
CGACTCCCAACTCCCCCGAGGTCTCAGGTCTCACGCCGCCGGCCGCCGCCCTCCCCGCCG
CGTTGCTCCCCGCCGACCCTCCCGCGAGATCCACAGAGTGCCGCCACTCAGCCTCCCGCA
TCTCCCCTGCCGGAGGAGCGGACCCAAATTGGCGCGTCTCCCTCTGGCTCGCGCCGTCAC
CTGCTCCTGCCAAGCGGCGATCCCTCCCCGCGGACGCGGCGGGCCGAGGCGTGATGTGCG
GATCGGAGCATGGACGTGATCGCCTCGCCCAGTAGAAGCTGCAGCAGCCGTCGTGGGAGC
AGGTTTCGCGCGGTCTACTGCCATGACGATCTACCTAGCTCGGGAGGCTTCCAAGGTATG
GAGGAAGGTGTGCGCGGAGACGACGACCGAGCTGCCGCTGCTTCGCGAGAAGTGGCCGCT
ACTCCTCGCTGGGATTGTGTTCCAGTATATTCATGGGCTGGCTGCTCGAGGAGTGCATTA
CTTGCATCGGCCTGGACCACTGCTCCAGGACTTGGGATTTATGGCCCTTCCAGAGCTTGG
ACAAGACAGAAATTACATTAGTGAATGCACATTTGTTTTCATCTTCTTCTCCTTTTTTCT
GTGGACCTTTCATCCTTTCATTTATCATAGCAAACGCTTCTACACCATCCTAATCTGGCG
CAGGGTGCTCGCTTTTTTAGTTGCTTCACAGGTTTTAAGGATCATTACATTCTATTCCAC
CCAGCTTCCGGGTCCAAACTATCACTGTCGTGAGGGCTCAACTATGGCCACTCTTCCACC
ACCCAATAATGTGCTTGAAGTGCTCCTGATTAATTTTCCCCGTGGAGTAAATCTTGGCTG
TGGTGATCTTATATTCTCATCCCATATGATTTTCACTCTTGTTTTCGTTCGAACATATCA
CAAATATGGCTCAAAAAGGTTTATTAAGCTCCTTGCCTGGATAATGGCTATAATTCAAAG
TCTTCTCATCATTGCTGCTCGCAAGCATTACACCGTCGATGTTGTTGTTGCTTGGTATGC
CGTTAATCTAGTTGTGTTCTTTGTGGACAACAAGCTCCCAGAAATGCCGGACCGTACAAA
CGGATCGCCCTTGATTCCGCTGAGCACCAAAGATAAAGACGGCAGGTTGAAGGATGAGAA
GGACGTGAGGCTCAAGGATGAGTTCCATAAGTTGTTGAACGGAAACCATGGGGATCCCAC
CGATCGGCGACAGCGGGTGCAGATGAACGGGAGGCACCCCGAGGAGGACATGCTCTCCGA
CGCCACGCCCAACGGCGCGTGACGGGGAGTTGAGTTTTTCGTCTTGGCGCGCCCAAGGAG
AATCCTGTGGGCGATGGCCTTTTTTCTCTTTGTGTATCGGTGCTGAAACCGAACAAGACA
GACGCCCACCATCCCTTCCTTATTGCGATGGCCTTCCTTTGAACAAAAGATTCGTGGATG
TGGATGTGGGTGTAAATGTATATATCAACCTGCTTAATTCTATGATGAATCTATCCATCC
ATTGACGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37910.1	326	2e-168	protein\|phosphatidic acid phosphatase-related, putative, expressed
Brachypodium v1_2	Bradi2g23597.1	326	4e-176
Arabidopsis v10	AT3G54020.1	305	6e-127	\| Symbols: AtIPCS1 \| Arabidopsis Inositol phosphorylceramide synthase 1 \| chr3:20006098-20008020 FORWARD LENGTH=305