barSeed - Barley Seed Development Database

Probe CUST_15885_PI390587928

Source Contig U35_33665

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15885_PI390587928	Hv_44K_v2	AAGTAATTCTGGACATCTTAGCATGTAACGTCAGTGCACTTTCAAGCAGCTCAGTATAAT	3	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.564	2.289	1.106	0.641	0.424	0.748
Raw	28.456	63.093	27.829	25.873	4.600	10.810

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_33665	476	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (476 bp)

>U35_33665 476 Hv_44K_v2
TGCATTATACTGAGCTGCTTGAAAGTGCACTGACGTTACATGCTAAGATGTCCAGAATTA
CTTGGATGAGGCTTTTTACAAATAGTGAGCATGCCTTCAGTACCGTATGAACTGAGGGGT
GGGTGTGTCAGGTCAAGGTGGCGAGGATCATCATCAGTCTATATGCGTGTAAATCAGATT
TGCAGGTCCTCAAACGATCGATTTTTATATCGTTTGTCACTTTTGCGTCTAGCTTACTCT
CGGCTTCGCTGATGATCTCGAGCTCCGCCAATAGAGTGGCAAGTTTTTTCGTATCATCAT
CCTGCTTGCTCTGCGGGGCCTTCTCGCGGTAGCCTGAAGCACTCATTTTCTGTGACAAGG
TGTCATATTTCTTTTGAACTTCCTCTCTCTTCTTCCTAAGCTTCTCATGTTCAGCATCCG
TGTCGAGAGCTCCCCGGAGCTGGAGATACACGGCTAGATCTTTGTTTACAATATCT

Homology of Contig U35_33665 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None