barSeed - Barley Seed Development Database

Probe CUST_15880_PI390587928

Source Contig U35_19374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15880_PI390587928	Hv_44K_v2	TCTGCAAACGTTCTTTGACATGGTTGACAAAAATGCTGATGGAAGAATCACCTCAGAGGA	1139	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249349.1	3364	2e-24	1102 - 1161	100	60 / 60	plus	ABC08301 ABC08302
MLOC	MLOC_81745.6	3504	2e-24	2202 - 2261	100	60 / 60	minus	ABC08301 ABC08302
MLOC	MLOC_81745.2	3466	2e-24	2240 - 2299	100	60 / 60	minus	ABC08301 ABC08302
MLOC	MLOC_81745.5	3573	2e-24	2239 - 2298	100	60 / 60	minus	ABC08301 ABC08302
MLOC	MLOC_81745.4	3488	7e-23	2239 - 2299	98	60 / 61	minus	ABC08301 ABC08302
MLOC	MLOC_81745.7	1710	9e-22	420 - 481	97	60 / 62	minus	None
JLOC1	JLOC1_54377.4	4289	8e-25	1189 - 1248	100	60 / 60	plus
JLOC1	JLOC1_54377.3	4292	8e-25	1192 - 1251	100	60 / 60	plus
JLOC1	JLOC1_54377.2	4231	8e-25	1131 - 1190	100	60 / 60	plus
JLOC1	JLOC1_54377.1	4227	8e-25	1127 - 1186	100	60 / 60	plus
Harvest21	ABC14711	939	3e-25	860 - 919	100	60 / 60	plus
Harvest35	U35_19374	1219	3e-25	1140 - 1199	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_19374 1219 Hv_44K_v2
GTCAAGCTGTCCATGCCTCCAACCTCTCTCCCACGGATACACAGTAGCGCTACAGACCCT
CATCATCCTTGCTGCCTGCCACGAGCACTCTCCTCCTTGTTGTTTTGTGAAGCGACTGGA
CTGGTGTCATTTGGTGCGCGTCGCATTGGAGGAGTAGATGAGCACGAGTGCTAGACAGCA
GTACCGAACCACTACCAGGCAGGCAAAAGCCACCTGTAGATGCAACACTGGTTGGCGCTT
TCTCTAGTGCGTTTAGGTTCCAGAAAACTCTCATCTGTGTTCAATAGGGTTCGCGCCTGC
GCAGTTTGGTTGCGGCGGACTCGGGTTTTCTTTGCTCTTTTCTTCTTGGTGGAATTTCGA
GAGATGCTCCGGGTTCCAATCAGTGGCTGAAATCTCTCTCGGGATTAAGACAGAAGGAGA
AAATTGCCCTGAGAGGTAGAGATGGAGATGCCTGATATTGAAGCTGGCACGGTAGTCACT
GATTCTGATAGTTCAAGAAGGCCACAAGACAATACTGCGACAACAATCCCAAACAGTGGA
AGTTTAGAAGGTTCAAGCCACAAGACCACAAAGACCACCAGGTTCAAAGACGACGGCGAC
GACGGGGTTGTTGAGATTACCCTTGACATTCAACGCGATTCAGTGTCAATCCAAGATGTC
AGGCCAGTTGCATTTGACGATAGTGGCTCAGCATCAGCACACAGTGGTGCACTGGTGTCA
CCTTCCTCATCAAGGGGTGGCAAGCTGTCATCAAAACTGAGACAGGTGACAAATGGGCTA
AAGCTGACGAATCCAAGCAAGAAGGTGCCACCGCCGACCGCACCAAAGACCGCGAGGAAG
AGATATGACCGAAGCAAGAGCAGTGCTGCAGTGGCACTCAAAGGCTTGCAGTTTGTGACT
GCGAAAGTTGGCAACGATGGCTGGACTGCCGTGGAGAAACGATTCAATCACCTACAGGTT
GATGGCATGCTACTCCGTTCAAGATTTGGGAAATGCATTGGGATGGAAGGGTCTGACGAG
TTTGCGATGCAAATGTTTGACTCGTTAGCGAGGAAGAGAGGGATGGTGAAGCAAGTGCTG
ACTAAGGAGGAGCTGAAAGATTTCTGGGAGCAACTCGGTGATCAGGGTTTTGACAACCGT
CTGCAAACGTTCTTTGACATGGTTGACAAAAATGCTGATGGAAGAATCACCTCAGAGGAG
GTTAAGGAGATTATTGCGC

Homology of Contig U35_19374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g25820.2	881	5e-91	protein\|respiratory burst oxidase, putative, expressed
Brachypodium v1_2	Bradi2g12790.2	902	5e-111
Arabidopsis v10	None