barSeed - Barley Seed Development Database

Probe CUST_15876_PI390587928

Source Contig U35_19376

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15876_PI390587928	Hv_44K_v2	GAGTCTTGTCAATTAGTGTGGCAACCTCGATTGCCTTTTCTTATTTGTGTTTACTATATC	1399	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.025	1.080	2.174	1.382	1.221
Raw	26.160	521.262	21556.433	63650.700	14842.293	14233.390

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43583.2	1503	2e-24	1413 - 1472	100	60 / 60	plus	ABC10909
MLOC	MLOC_43583.3	1602	2e-24	1471 - 1530	100	60 / 60	plus	ABC10909
JLOC1	JLOC1_28176.3	1809	8e-25	1636 - 1695	100	60 / 60	plus
JLOC1	JLOC1_28176.2	4245	8e-25	4072 - 4131	100	60 / 60	plus
JLOC1	JLOC1_28176.1	3188	8e-25	3015 - 3074	100	60 / 60	plus
Harvest21	ABC10909	1558	3e-25	1400 - 1459	100	60 / 60	plus	ABC10909
Harvest35	U35_19376	1558	3e-25	1400 - 1459	100	60 / 60	plus

Contig Sequence (1558 bp)

>U35_19376 1558 Hv_44K_v2
AGGGATATATCTAATCCCTTCTTGGTATCACAGCCATCACCCCCCTCTTCATCATGAGCA
ACATCTCTCCTTCTTTTGGCGCCCCAGGGCTTCTTGCCATGCCCCCTCCCGTTCGTCGTT
CCTTTCCTCTCGCCGGTATCCAGAACACCAAGCATGTTCTCCCCTCCACCCAGCCTCCTA
TGCACCGAATCGATATTATCGACTTCATCAATTTCAAGCTAGATCCCGCCGCAAACAACT
ACACTCAATGGACGCGGAAGTTCTATGCTATCCTTGCCAAGTACGACTGCACCCATCATG
TCGACCACGAGTCTGATCCCCATCTTCAAGATGCGAAGTGGCGCAATGACGATCTAACTA
TTGTGTTGTGGTTCTATGCTACCATCTGCGATGAGCTCTATGAAGTGGTGAGGGAGCCAG
AGAACACCGCGTACAATGTGTGGGACAAGTTGTACACTTTCTTCCGGGACAACGAGCCCG
GATGGGCCATCCACATCCGTGAAGAGTTAAGCGCCACCAAGCAGGGAGACATGACTATCG
GCTCCTACTGCCATCGACTAAAGGCCCTTGCTGACGCCCTTGCCGATGTAGGTGAACCAG
TCAACGACGAGATGTTGATATTGCTGATGATCCGAGGGCTCAACTACCGCTTCGATGTGC
TCGCGACTATTCTTCGTATGCAAATGCCTTTTACTACTTTTGTCCAGGCTCGTTCCCTAC
TGTTGCTTGAAGAAATCAATCTCAATGAGCGTGATAGGGAGAAGGGCTCCTCCGCCATTA
CCATTGGCACCAACACCAGCTCCAACTCCACCCCAAGTGGAAGCAACAATGTGAGTCAAG
GCGATCGTGGCGCTTTCTCCAGCATCGGGGTTGGACAGTCAACACAACTGCAACAACGAC
CATGCATGGGCTACTATGCGCCATGGGGGGCGCCCTTCCCATTGCCAGGGCAACCTCCTC
GCAATCAGTGGACCACACGGAACATCGGGAGCGTCCTTAACCCATGCACATCTACTCCAA
CTCAAGCATACCCGTTGCTCTACTCCGAGGTATCCAATTCCATGCAATCGCCTCCCTCGT
GGGGCCAGTTCTCTCTGATCAGCACAACTCCCGGCAACACAAGCTCCACCCCTCCCCCAG
CAATGGCTGGTACATGGGCCCTGCCGCGTCATCGCATGTGATGGGTTGCAGAGGATCTAG
CCACCAAAGAGCATCCTCATGAGATCTAGTTGTTCCAAAGATCTATATCCGTTTTCTCCA
CAAATAAAACGTGATCCCTCGATCTGCTCCATCAACATGTGGCATTGGCGACTTGGAAAC
CTAGGGCGAGCTTCGTTAGTGGCTATGGAGAAAAGGCCTTCCTTCTCGTGATAAGCCAAT
GCGGGCATCACAAGTTTATGAGTCTTGTCAATTAGTGTGGCAACCTCGATTGCCTTTTCT
TATTTGTGTTTACTATATCATCATTTAGAATAATACATTGTAATTTGTGGACTTTGCCAG
TTTATGGTTTATCTGCTTTCTTATATTACCCTATCGTTTTATAAAAAAAAAAAAAAAA

Homology of Contig U35_19376 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None