barSeed - Barley Seed Development Database

Probe CUST_15874_PI390587928

Source Contig U35_19378

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15874_PI390587928	Hv_44K_v2	GGTTTGTTGTTGAGTTTGAGACGCATCTAGTACTGTATATTGGTGTTACTAGCCAAAAAA	1083	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.177	2.848	0.957	0.872	0.544	0.412
Raw	60.663	85.005	25.131	36.647	6.850	5.793

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5891.1	1292	1e-23	1213 - 1270	100	58 / 58	plus
Harvest21	ABC11467	1154	3e-25	1084 - 1143	100	60 / 60	plus	ABC11467
Harvest35	U35_19378	1154	3e-25	1084 - 1143	100	60 / 60	plus

Contig Sequence (1154 bp)

>U35_19378 1154 Hv_44K_v2
TTTGCGAAAGAAAAAAGCAAACCTACCGCTCTCCGACCGTCCATGGCGCCGCCGGCGCTC
CGGTCGTGGGGGGAGCTGCAGCACGACCTCCTTGTGGCGATTATGTCTCGCGTGGGCGCC
CCCGATTTACTTTCCGGCGGCGCACCCCGTACCTGCTCCGCGTGGTGGGCCGCCGCTCGC
GACCCGCTCGCATGGCGCCGCGTTGATCTCCGGGACTGGACAGCCCGGACATCCGCCCGG
CGCGCGGCGGGGACCGCTGCCACCAGAGGGATCGTCTCTGTACATGCCGCTCTCACCGGC
GACCTTGAGGTCGCCGCAACGCGGGCAGATGGTCGGATGGAGGCTGTGCTCCTCCCGGAG
TTTGCCGATGAAGAGCACCTCATGCTCCTCGCCGAGAGGAGTCCAAACCTGCAGTATTTC
AGCTTTCCTACCACATGTATGACTTCTGATGACTTCTGTGGGGCGATCAGCAAACTTCAG
TCACTTAAAGGCATGGCGGTGGATGAGAGTCTTGTTCATTATGATGTCCTCCTCCATGTG
CACCAGTGTTGCCCAGGTTTTCGGGAACTGAAAGTGTTTGCTCTCTACGTGGATGAAGAT
ATGGCCTCCATAATTTGCGAGTCTCTTCCGCAGCTGAGGAAGCTTGAGATACCAAATGCT
GATATGTCCTGTGCTGCAATAGTAAAATTCCTGGATTGCCTTGACAAGCTTGAGTATCTG
GATATATCAGGATATGAGACTTCGGCCATCTCAAGTAGTGTGCTTCATAAAGCTTCGCGG
CTGAAGGCCTTTGTCTGGAACTCAAAGTTTGAGCTCGGAGAGTTCATGGACTGCTCAAAT
TGTGGAGAACACTCCATTAATCCTCAGGAGCCCTGTAAGTGCACTATGGATCACAAAGTC
ATGGACTGGCTGGCTGGGCCATCGCAAACTGCCTGACCCCAGAGCATGCATGTATAATTT
CTGTTATTAACTTTTCATAATGTCCTGTTTGAAAATTTCAAATACGTTCGAGTTGGTTGT
ACAATGTAATTGAGGGTACATTTGAGTGCACAGTCGATATGCCATTTGGTTTGCCCACGG
TTCGGTTTGTTGTTGAGTTTGAGACGCATCTAGTACTGTATATTGGTGTTACTAGCCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_19378 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g36439.1	217	2e-101	protein\|F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g15750.1	298	5e-170
Arabidopsis v10	None