barSeed - Barley Seed Development Database

Probe CUST_15873_PI390587928

Source Contig U35_19379

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15873_PI390587928	Hv_44K_v2	CGACGCCGGCGATGGTGGTGGGTGTATAGTGCAAATAATGGAATTCAATTTAACCCTCGG	1112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370987	2829	7e-23	2773 - 2829	100	57 / 57	plus	ABC12417 ABC14748
MLOC	MLOC_52826.1	3855	7e-23	2275 - 2334	98	59 / 60	plus	ABC12417 ABC14748
JLOC1	JLOC1_33871.1	2724	4e-23	2275 - 2334	98	59 / 60	plus
Harvest21	ABC12417	1191	1e-24	1113 - 1171	100	59 / 59	plus	ABC12417
Harvest35	U35_19379	1193	3e-25	1113 - 1172	100	60 / 60	plus

Contig Sequence (1193 bp)

>U35_19379 1193 Hv_44K_v2
CAGCGCCGCTGGCTCAAAGACACCGCCTACTTCAAGTCCACGCCCAACCCCACGGCGAGC
ATCACGTTCAAGGGGACGGTGCTGGGCATCTCCCCCGCCCCGACGGTGGCCTTCTTCTCC
TCCCGCGGGCCGAGCAAGGCCAGCCCGGGCATCCTGAAGCCGGACATCAGCGGGCCGGGG
ATGAACATCCTCGCCGCGTGGGCGCCGAGCGAGATGCACCCGGAGTTCATCGACGACGTG
AGCCTGGCCTTCTTCATGGAGTCCGGCACGTCCATGTCCACCCCGCACCTGAGCGGCATC
GCCGCGGTCATCAAGAGCCTGCACCCGAGCTGGTCCCCTGCGGCAATCAAGTCGGCGCTC
ATGACCTCCTCGGACATCGCGGACCACGCCGGCGTGCCGGTGAAGGACGAGCAGTACCGC
CGGGCGAGCTTCTTCACCATGGGCGCCGGGTACGTGAACCCGTCGCGCGCCGTGGACCCG
GGCCTGGTCTACGACCTGTCGCCCAACGACTACATCCCGTACCTGTGCGGGCTGGGCTAC
GGGGACGACGGCGTGAAGGAGATCGTGCACCGCCGCGTGGACTGCGCCAAGCTGAAGCCC
ATCACCGAGGCGGAGCTCAACTACCCGTCGCTGGTGGTGAAGCTGCTGTCGCAGCCGATC
ACCGTCCGCCGCACCGTGAAGAACGTGGGCAAGGCCGACTCGGTGTACACGGCCGTGGTG
GACATGCCCAAGGAGGTGTCGGTCACGGTGCGCCCGCCGATGCTGCGGTTCACCAAGGTG
AACGAGCGGCAGAGCTTCACGGTGACGGTGCGGTGGGCCGGGAAGCAGCCGGCCGTCGCC
GGCGCCGAGGGGAACCTCAAGTGGGTCTCCCCCGAGCACGTCGTGCGGAGCCCCATCGTG
GTGCCGCCGGCCAAGGTGGTCGCGTAGGGCGCTCGGTCGGGTTCGTCGTCTTCGTCATCG
GTAGAAAAAAGTTCTCGGCGGCGTACCTCGTAGGCGTGCGTGACAGAGAGTAAGAACATT
GCGTTATTGTATAGGGTGGCGCGGTCGATTAGGCGCGTGCGTGCGTACTGGGTCGAGCGC
CGCCATTGCTGACGGCGCAGCAAGCTCGGCTGCGACGCCGGCGATGGTGGTGGGTGTATA
GTGCAAATAATGGAATTCAATTTAACCCTCGGAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02750.1	755	4e-169	protein\|OsSub25 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi1g77260.1	726	1e-172
Arabidopsis v10	AT4G34980.1	764	1e-68	\| Symbols: SLP2 \| subtilisin-like serine protease 2 \| chr4:16656929-16659223 REVERSE LENGTH=764