barSeed - Barley Seed Development Database

Probe CUST_15871_PI390587928

Source Contig U35_45643

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15871_PI390587928	Hv_44K_v2	GTACTTTATCAAGTGAGAAAGAAATGCATGTGAATGAACTAAAGAAGTTGACTGCTTTAC	127	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.601	0.519	1.199	1.175	1.154	1.043
Raw	21.351	27.280	59.449	80.846	30.112	31.140

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369948	2664	2e-24	1143 - 1202	100	60 / 60	plus	ABC17498
MLOC	MLOC_35815.1	556	2e-24	392 - 451	100	60 / 60	plus	None
JLOC1	JLOC1_23075.1	623	8e-25	329 - 388	100	60 / 60	plus
Harvest21	ABC44764	187	3e-25	128 - 187	100	60 / 60	plus
Harvest21	ABC14676	1186	3e-25	721 - 780	100	60 / 60	plus
Harvest35	U35_45643	187	3e-25	128 - 187	100	60 / 60	plus
Harvest35	U35_21290	1188	3e-25	721 - 780	100	60 / 60	plus

Contig Sequence (187 bp)

>U35_45643 187 Hv_44K_v2
CTTACTAAAACTGAACACACAATCACTGACGGTTATGAGATGGACCCAAGTGATNTNCTN
GAAAATTCTTTGATTGCCAANGAAAAAATTATTTCAAAANTGAATGCGNAACTGCGTAAC
GTNGAAAGTACTTTATCAAGTGAGAAAGAAATGCATGTGAATGAACTAAAGAAGTTGACT
GCTTTAC

Homology of Contig U35_45643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None