barSeed - Barley Seed Development Database

Probe CUST_1586_PI390587928

Source Contig U35_30213

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1586_PI390587928	Hv_44K_v2	CATTGCGAAATTATCCATTTCAGCAAGAAAATGGTTGATTCATATGGATGGACAGAAGAA	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10028.5	1239	2e-24	237 - 296	100	60 / 60	plus	ABC07530
MLOC	MLOC_10028.2	579	2e-24	452 - 511	100	60 / 60	plus	ABC07530
Harvest21	ABC30013	644	3e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_30213	644	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_30213 644 Hv_44K_v2
CCGTCGTCCCCGAGCAAAGCTGCCAGCGCCACCTGCCCACATCATGGTGGGAAAAAGGAA
ACCCACCGCGAAGCCAACCCCAACAAAGCGTCCCCCTCCGTCGACAGCGCGGAGGACCCG
ACGCCGACGCCGGGAGCCATGGCCCTCCTGCCACTTGTGGGCTTTCCCTCCTTCCCGTTC
CCGGCCTGCCCATCCAGGTACTTGTGGTGCAGAAATGTCGATTCCTCCTGCTGATTATGG
TTGATTTCTTCCTGTCAAGTGTTGGATCCGCCGCTGCACTGCTCTCTTCTCCGTTGATTT
GGTAGAGGCTTCGGGTGTTGCTTCTTTGGCAGGAGAACATGTGGCCCTGCTTCGCGCATG
AACTTCAGATGCTGCGTGCAAGAGAGAGTGCCGACGGTGAGGAACGACGGGATATCCAAG
CATTTGCTCTCCTGCCTCGCTGCTTCCCTCGTCTTCATCTCTACACCTAGCCAGGTACCT
CCATCTATCAACTTGTCACCCATAGATCCACTTGAACTAATTCAGAAGGGAAATCTGCTT
TGCCATTGCGAAATTATCCATTTCAGCAAGAAAATGGTTGATTCATATGGATGGACAGAA
GAAAAAAAACAGAGATACTCCGTAGTTAGTACGGCTGCCAGTTG

Homology of Contig U35_30213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None