barSeed - Barley Seed Development Database

Probe CUST_15864_PI390587928

Source Contig U35_21690

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15864_PI390587928	Hv_44K_v2	GCGTGCTTCGAGATCCGGTGCGTGAACCAGCCGGGCTGGGCGTGGTGCCTCCCGGGGAAG	365	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.538	1.415	0.664	0.798	1.819	0.928
Raw	56.061	27.212	11.683	22.649	14.300	9.809

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65431.4	797	2e-24	539 - 598	100	60 / 60	minus	None
MLOC	MLOC_65431.3	1521	2e-24	772 - 831	100	60 / 60	minus	ABC03674
MLOC	MLOC_65431.2	1574	2e-24	911 - 970	100	60 / 60	minus	ABC03674
JLOC1	JLOC1_43058.1	1586	8e-25	602 - 661	100	60 / 60	plus
Harvest21	ABC22439	512	3e-25	334 - 393	100	60 / 60	plus
Harvest35	U35_21690	545	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_21690 545 Hv_44K_v2
TCGAGCACTGTTGGCCGACTGGAACCCCCCACACCACTCGCCAGCGCCTCCGCCGTCCAC
TCGCCGCCACCTGCTCTGCTCACCACGAGCGCGCGCGTTCGTCCGGAGCGACGATGGCCG
CCGCAATGCCGCCGCTCGCCCTCCTCGCGGCGCTGCTGCTGCTGTCGTCCCCCGCCGCGG
CGCGCGTGCCCGGCGTGTACACCGGCGGCGACTGGCAGAGCGCGCACGCCACCTTCTACG
GCGGCAGCGACGCCTCCGGCACCATGGGCGGGGCGTGCGGGTACGGGAACCTGTACAGCC
AGGGGTACGGGGTGAATAACGCGGCGCTGAGCACGGCGCTGTTCAACGAGGGGCAGAGCT
GCGGCGCGTGCTTCGAGATCCGGTGCGTGAACCAGCCGGGCTGGGCGTGGTGCCTCCCGG
GGAAGCCGTCCATCGTCGTCACCGCCACCAACTTCTGCCCGCCCAACTACGCGCTCCCCT
CCGACGACGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGACCTCGCCATGCCCATGT
TCCTC

Homology of Contig U35_21690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60720.1	265	2e-84	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g03640.1	267	9e-86
Arabidopsis v10	AT2G37640.1	262	1e-74	\| Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 \| Barwin-like endoglucanases superfamily protein \| chr2:15788077-15789812 REVERSE LENGTH=262