barSeed - Barley Seed Development Database

Probe CUST_15860_PI390587928

Source Contig U35_21694

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15860_PI390587928	Hv_44K_v2	CAAACCTCAGTGTCAAAAGCCATGAAGATATATGTTAATCCCCTAAATTTGATCCTCAAA	912	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.056	1.457	2.018	1.072	0.303	0.252
Raw	367.961	784.764	947.218	809.503	77.754	71.225

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58906.1	1275	9e-22	211 - 268	98	57 / 58	minus	ABC16099
JLOC1	JLOC1_38298.1	1112	5e-22	48 - 105	98	57 / 58	minus
Harvest21	ABC16099	986	3e-25	913 - 972	100	60 / 60	plus	ABC16099
Harvest35	U35_21694	986	3e-25	913 - 972	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_21694 986 Hv_44K_v2
CGCCCTTGCCGGAGAAGAAGGATCCCTCCCCTCCAACCCCACACACCAACCAACCAACCC
GGACCCAGGCCATGGCCGACGCCTCCGCGCTGGTCGCCGTGCCGCCGCCGCAGCAGAGGC
ACCCGCTGAGCCAGATCGCGGCGAGCGGGACGCACCGGCTGCTGCTCAAGCAGTGGCTCA
AGGAGGAGGACCTGCTGGCCCGCCGCGTCGCGCTGCGGGAGGCCCGCCTCGACGGCGCCC
GCAAGGAGATCGCCTTCCTCTACTGCGCCTTCTTCGCCTTCCACGCCGCCTCCGTCCTCC
TCCTCTTCCTCTCCGCCTCCGTCCCCTCCTCCGGCCCGTCCTCCTCCACCTGCCGCCGCT
CATGGATCCCCTGCCTCGTCTCGCTGCTCTCCTCCCTCGCCATGCTCTGGGCGCTGCGGT
ACAAGGCCGACACGGAGGCCGTGCTGGAGCGGGTGCTGGCGCGGGAGCAGGAGGACGCCG
CGCTGCTCGCCCGCTGCGTCGCCGAGCTCAAGCGCAAGGGGCTCGACTTCGACCTGCTCA
AGGAGGTGGACGCGCTGCGCAGGGCCAAGGCCCTCCGCGTCGAGGCCAAGGCCGGCTCCG
GCGCGGCCGCCGACGGGCCCAACCGCTGGCCCGCCAGGGACCTCCCCGTCTTCGCCCTCT
TCGGCGCCGCATGCGGCGTCATCGTCCTCACCAGGTTCCTGCTCTGCAACTAGGACGGAT
CTCACGAATCATGATCCCTTCCGTGCTCATCAGGACTTCGATCGCTGGATCGATTGATGA
AGCTTACTGCTGTTGTTTAATCCGGCAGAACTGTTTGTTCTGCGAATTTTGATGTCTGCA
ATAAGGAAAAGTTTGTTGTGCGTTCGATTTTGTTTCTGTGGTTGTACCGGCTGAGAGCGA
AATTAACCTTCTCAAACCTCAGTGTCAAAAGCCATGAAGATATATGTTAATCCCCTAAAT
TTGATCCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g06840.1	212	1e-73
Arabidopsis v10	None