barSeed - Barley Seed Development Database

Probe CUST_15857_PI390587928

Source Contig U35_21698

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15857_PI390587928	Hv_44K_v2	TCTTCTCTTTGTCGCCGCAATCTTTTTCTAACGGGCATAATGCTGCAAGCTGTACTCCTT	612	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.248	1.728	1.289	0.862	0.424	0.498
Raw	2329.307	4970.113	3264.193	3491.747	584.305	755.702

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375348	2411	2e-24	2340 - 2399	100	60 / 60	plus	None
MLOC	MLOC_77359.2	3426	2e-24	20 - 79	100	60 / 60	minus	None
MLOC	MLOC_77359.1	3551	2e-24	52 - 111	100	60 / 60	minus	None
JLOC1	JLOC1_51591.2	3575	8e-25	3353 - 3412	100	60 / 60	plus
JLOC1	JLOC1_51591.1	3552	8e-25	3330 - 3389	100	60 / 60	plus
Harvest35	U35_21698	979	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_21698 979 Hv_44K_v2
AGGACCAGCTGAAGGATACAGCTGAGGCTGTTCAAGCTGCTGGTGAATTGCTAGTACGAC
TAAAGGAGGCTGAGGAAGCGACAACAGTTGCCCAGAACCGAGCCTGTTAGCAGAGCAGGA
GACGGAGAAAGCCTATCAGGAGATCGACAACTTAAAAAAGAACTACGACCATGAAATCAT
CGCGCTAAATCAATGCCTGACAGAGTGCTCCAAGCACAACAATGCTACATCTCTGCCTGC
CACATCCAGCATTCTCGACTCTGCACCCAGGTATGACACGGTTGGTGGTAGCCCCGGTGA
TTATCAGCAATGGCCGGGGGAGGTGGACGCCTTACACCAGCACGGATCACTGGAGGTCAC
CAAGAGCACCGACCTCAACTCGTGGTTCTCCGGGTACGACAGATGCAACATCTGATGATG
CCGTCACTGTTTATTCTCTGTCTACCTTGGGAGGAAAGAGTTAGTGGCAGCAGTATGTTG
TACACCTTGTAAGCATCAGATCAGAGGGCCAAAGGAAGCGTTTCTCTTCACCGTCCGTGT
GGCGTGTCATTACAGATTCTTGTACATTACGATGGACACCGACGCTCTACATTACAAGAG
CCAGAGCGATGCTCTTCTCTTTGTCGCCGCAATCTTTTTCTAACGGGCATAATGCTGCAA
GCTGTACTCCTTGCAGCGGCCGCTGGAGGAGGCCGACGCCGCAGCAGCAGCAGCAAGACC
CTCCTCGTAAATAAACATACAAATGCGCCCTTAACTTTGAAACTAGCTACTGCCTTTTCA
CCTGCCCAGGGCCATGGGTTTGGTTTGTATTGATAATAAAAATGGGGTGCTTAGTTGGAT
TGAGCATTTTCATAATGGCATGGATGGAGCTTGGAGTTGATGATGCTCTTTTGTTTGTGT
GAATTTTAGTAGCCGCGGTGTCTGCAAGTTATTATGATATGATACTGCCTCTGCTTCGAA
AGCTTTTCGACGTTTGACC

Homology of Contig U35_21698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None