barSeed - Barley Seed Development Database

Probe CUST_15856_PI390587928

Source Contig U35_21699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15856_PI390587928	Hv_44K_v2	TTGAAGTACTTGGATGGTGTCGATGCCGAGGGCAATGACCGTCTGGAGTCCGATGAGGAC	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368724	4077	2e-24	3409 - 3468	100	60 / 60	plus	ABC16899
MLOC	MLOC_74117.2	1116	2e-24	493 - 552	100	60 / 60	plus	ABC16899
MLOC	MLOC_74117.1	1254	2e-24	496 - 555	100	60 / 60	plus	ABC16899
JLOC1	JLOC1_49379.1	1157	8e-25	495 - 554	100	60 / 60	plus
Harvest21	ABC22540	624	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_21699	648	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_21699 648 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGTCTGCTCCGTCGGCCTCCGAAGCTCCGCGGCTCCAGGGTT
TAGCTAGGGTTCTGCCCGCGACCACCCCCGCCGCCGCAGCCATGGCCGGCGCCGGAGAGG
ACGACGCGGCGTGGGAGAGGGCCATCAGCGCGGCCGTCAAGAGCGCGCCGCTCTCCCCCT
TCTCCGCGCCCAAAACCCTAACCCTCGACGGCGCCGTCAAGTCCTCCACGGGCCGCCTCC
CCTCGCCGTCCCTCTTCGACCGCTTCCCCTCGCTCGAGGAGCTCTCCGTGGCCGGCGCCC
GCCTCTCCTCGCTCGCGGGCCTGCCCCGCCTCCCGGCCCTCCGCCGCCTCTCCCTCCCCG
ACAACCGCCTCTCCGGGGCCGGCTCCCTCGCCGCCGTCGCCGAGTCCTGCGGCGGGACCA
TCCGCCACCTCGACCTGGGAAACAACCGCTTCGCCGCCGTCGAGGAGCTCGCCCCGCTCG
CGCCGCTCGGGGTCGAGTCGCTGGACCTGTTCCAGTGCCCCGTCGCCAAGCTCAAGGGGT
ACAGGGAGAAGGTGTTTGCGCTGGTTCCCAGCTTGAAGTACTTGGATGGTGTCGATGCCG
AGGGCAATGACCGTCTGGAGTCCGATGAGGACGAGGAGGAGGATGAGG

Homology of Contig U35_21699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46600.1	273	7e-61	protein\|acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed
Brachypodium v1_2	Bradi1g12837.1	278	5e-67
Arabidopsis v10	None