barSeed - Barley Seed Development Database

Probe CUST_1584_PI390587928

Source Contig U35_30215

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1584_PI390587928	Hv_44K_v2	TTCTTCTTCCCCGGACGTGACATAGATTCTCTACGTGATGATCAATCGGCAGTAAAGATG	157	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.652	5.158	1.259	0.570	0.777	0.271
Raw	223.897	286.243	57.932	45.686	21.557	7.575

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC30015	339	3e-25	158 - 217	100	60 / 60	plus
Harvest35	U35_30215	339	3e-25	158 - 217	100	60 / 60	plus

Contig Sequence (339 bp)

>U35_30215 339 Hv_44K_v2
GTACGTCTGATGAATCAAATACAGTACAGTACAGCACACAGCTTATAAGCTCCACACAAC
CGCTGGCACGATAGCTTTAACTTAACACACACTTGCGCCATCTTATTTACGGTCGTCCAA
ATCGGGTTGCGTACCCCTGCGATCTAGAGTACGTTTCTTCTTCTTCCCCGGACGTGACAT
AGATTCTCTACGTGATGATCAATCGGCAGTAAAGATGGTGGTGAGAGCTCCTGCAGCGAC
TGTGGTCATCAATCCAGTGAACCCACCANTGAATCCACCANCACAAGCGGCGTCACCGCA
TGGAGCTGTGGAATTTGTGGTGTTCACTGTTCTCCTCTT

Homology of Contig U35_30215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None