- Probe CUST_15843_PI390587928
- Source Contig U35_19387
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15843_PI390587928 | Hv_44K_v2 | CAAGAACATTGCATTTGTCTTTGTTTTGATTTTTCTTCCTTACGCAATGACATGCAGCTC | 490 | GeneList: thistle2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.260 | 0.871 | 2.428 | 1.992 | 0.609 | 0.890 |
| Raw | 10.306 | 60.028 | 134.837 | 174.056 | 18.567 | 30.008 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252755.1 | 1285 | 2e-24 | 1051 - 1110 | 100 | 60 / 60 | plus | ABC18459 ABC26738 |
| MLOC | MLOC_60487.3 | 3477 | 7e-23 | 2178 - 2237 | 98 | 59 / 60 | minus | ABC18459 ABC26738 ABC30536 |
| MLOC | MLOC_60488.7 | 5010 | 7e-23 | 2459 - 2518 | 98 | 59 / 60 | minus | ABC03926 ABC03927 ABC18459 ABC26738 ABC30536 ABC34594 ABC39256 |
| MLOC | MLOC_60488.2 | 9067 | 7e-23 | 7768 - 7827 | 98 | 59 / 60 | minus | ABC18459 ABC26738 ABC30536 ABC34594 ABC37694 |
| JLOC1 | JLOC1_39449.1 | 3777 | 4e-23 | 1126 - 1185 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC18459 | 744 | 1e-23 | 504 - 563 | 98 | 59 / 60 | plus | ABC18459 |
| Harvest35 | U35_41137 | 731 | 3e-25 | 66 - 125 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_19387 | 577 | 3e-25 | 491 - 550 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_19386 | 732 | 1e-23 | 492 - 551 | 98 | 59 / 60 | plus |
Contig Sequence (577 bp)
>U35_19387 577 Hv_44K_v2 CCTTTTTTCCTAGTAGTTCTGATCTACCTTCCCATCTAATAGGATTAGTTATTATGTCTA AGCATGTTTTTAGAAGATTAGATGATTAAGCAAGCTCATNTGATATGTAAGTGGATAGTT TGAGGTTTTGTTTATCATGAAAAACAAGGGATTAGCAAGTTTGAGCTCGGTGGTAGAATT GCTCAATGAGACCGTGAATAGGAGCATGATTCAACCAATTGACATCAATGTTGGTAAATG CATGGAAAAATCTTATTGTATACATGATATGGTGATTGATTCCATATGTTTCTGCCAAGT GAAGAAAAGTCACTTCAATTGAAGCGATAACGGTCTGTCCAAAAGCAAGATTTGAAGATT ATCCATCCCAAAGTGCATGACAGGTAGCAGCTATGCCACAAGTCAGGTCTCTTGCAATTG TTGATTCATTGTAGCTTATGCTGAGTGTTCAGTTCTACATGTTTGTCTGTCCTTTGCAAT CAGGATGATTCAAGAACATTGCATTTGTCTTTGTTTTGATTTTTCTTCCTTACGCAATGA CATGCAGCTCTCATTGTATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_19387 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |