barSeed - Barley Seed Development Database

Probe CUST_15842_PI390587928

Source Contig U35_45650

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15842_PI390587928	Hv_44K_v2	ATGGCATCAAGGATTCTTTTACCCTTGAAGGCCATCTTGTGACTAGGAACCCTGATACTA	304	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.562	1.106	1.124	0.757	0.330	0.402
Raw	193.723	197.451	191.621	202.548	31.898	41.655

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63540.3	4481	2e-24	3481 - 3540	100	60 / 60	plus	ABC18411 ABC40085
MLOC	MLOC_63540.2	3191	2e-24	945 - 1004	100	60 / 60	minus	ABC18411 ABC40085
MLOC	MLOC_63540.1	3169	2e-24	985 - 1044	100	60 / 60	minus	ABC18411 ABC40085
JLOC1	JLOC1_41629.1	3141	8e-25	2120 - 2179	100	60 / 60	plus
Harvest21	ABC44775	367	3e-25	305 - 364	100	60 / 60	plus
Harvest35	U35_45650	367	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (367 bp)

>U35_45650 367 Hv_44K_v2
GACAAGACTTTAAAATGTTCTAATGGTCAGGGGTCAGATAAGGTGCCGGCTGAAGAAATT
TCAGTTCAGCAGCCAGGGGTTGATGACAGCCATGATCTCGTTGAGCAACAAAACAGAGAC
ATGGATACTGAAATTTCAAAAGATAAAAGCTCTGAGGAAGCTAAGGTGATTGCTAGTGAG
GTGCAAAATGATCAAGCGACAAGGAGGGATAAGAGAAAGACCCAGAACCAAGGCAGATGG
AGAGGGGTTGATCCTGTGATATTTTTCAAAGACGAAGCGACAATCAGAAGCATAATATCC
TACTATGGCATCAAGGATTCTTTTACCCTTGAAGGCCATCTTGTGACTAGGAACCCTGAT
ACTAATC

Homology of Contig U35_45650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g32840.1	881	7e-52
Arabidopsis v10	None