barSeed - Barley Seed Development Database

Probe CUST_15831_PI390587928

Source Contig U35_19393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15831_PI390587928	Hv_44K_v2	CGGTTGTAGCAGTTGGGAGGTCCACGACAAACATTTATCCTTGGCATTGGTAGTAAAAAA	1666	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.012	1.808	1.060	0.716	0.338	0.415
Raw	2209.173	3008.230	1585.477	1664.840	279.903	375.459

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60494.1	421	9e-22	326 - 380	100	55 / 55	plus	ABC12480
MLOC	MLOC_60490.9	785	9e-22	643 - 697	100	55 / 55	plus	ABC12480
MLOC	MLOC_60490.8	1588	9e-22	1337 - 1391	100	55 / 55	plus	ABC12480
MLOC	MLOC_60490.5	2459	9e-22	2208 - 2262	100	55 / 55	plus	ABC12480
MLOC	MLOC_60490.6	2455	9e-22	2204 - 2258	100	55 / 55	plus	ABC12480
JLOC1	JLOC1_39451.2	2539	5e-22	2132 - 2186	100	55 / 55	plus
JLOC1	JLOC1_39451.1	2543	5e-22	2136 - 2190	100	55 / 55	plus
Harvest35	U35_19393	1751	3e-25	1667 - 1726	100	60 / 60	plus

Contig Sequence (1751 bp)

>U35_19393 1751 Hv_44K_v2
GACGTGATAAAGTCCTTGTTGGCTGCAAATACAGGGAAGTCTCTAAGAAATTTTCACAGG
AGGCAAACACAGAGAAAATTTTGTATGGTCTGGATGATATAAAGCAAGCACGCGATATTA
TCATTGTTGAGGGTGAAATTGATAAACTTTCCATGGAGGAGGCTGGCTATCGTAATTGTG
TGAGTGTGCCAGATGGTGCACCAGCGAAAGTATCAAACAAACTTCCGGACAAAGATCATG
ATAAAAAGTATTCATATCTGTGGAACTGCAAAGAGTATCTTGACCCGGCATCTAGGATAA
TACTGGCAACAGATGCTGATCCTCCAGGGCAGGCTCTTGCTGAGGAACTTGCTCGACGTC
TTGGTAAAGAAAGGTGTTGGAGGGTCAAATGGCCAAAGAAGAATGAGACAGAATTTTGCA
AAGATGCTAACGAGGTACTTATGTTCTTAGGACCACAAGCATTGAAAGAAGTTATAGAAG
GTGCAGAACTGTATCCTATAAGAGGTCTATTCAACTTCAAAGATTTCTTCCCTGAGATCG
ATAGTTATTATCTAGGAATTCATGGGGATGAGCTTGGAATTCCTACTGGTTGGACATGTA
TGGATGGGCTCTACAAGGTTGTTCCTGGGGAGTTGACCATAGTAACAGGAGTACCAAATT
CCGGCAAAAGTGAGTGGATCGATGCATTACTGTGTAATATAAACAATAAGTGTGGGTGGA
AATTTGTACTATGCTCGATGGAAAACAAGGTTAGAGACCATGCCCGGAAACTATTGGAGA
AGCACATTAAGAAACCTTTCTTTGATGCTAGATATGGGGGCTCTGTGGAACGGATGAGTC
AAGATGAATTTGAGGAAGGCAAAGAATGGTTGAATGAGTCATTCCATCTGATTAGGTGTG
AAGATGATTGCCTTCCATCCATCGATTGGGTTCTTAATCTTGCTAAAGCTGCAGTTCTAA
GACATGGAGTACGTGGTCTTGTGATTGATCCTTATAATGAGCTTGACCATCAGCGCCCTC
CAAATCAAACTGAGACAGAATATGTCAGCCAGATCCTTACGAAGATTAAGCGTTTTGCTC
AACATCATTCATGTCACGTATGGTTTGTTGCGCACCCTAGGCAGCTTCACAACTGGAATG
GCGCACCGCCTAATATGTACGACATCAGTGGAAGTGCACATTTCATAAACAAATGTGATA
ATGGTATCGTCATACACCGAAACAGGGATCCAGATGCTGGCCCTGTTGATGTCGTGCAGG
TCTGTATGAAGAAGGTGCGGAATAAAGTGATTGGGCAAATAGGGGATGCTTTCTTGACAT
ATGACCGGGTTACTGGTGAATACAAGGAAGCAGATAAGGAGATCGTGGCAAAGGTGGTGA
AGCAGCAGCAGGTGCTTCAGAAATCGACAAGTTACAAACGCTGATTCCCTTTACTCGGGC
TGGCGCGGTTGCGATGGTATGGCCGCTTTTGTGGATGGCGCAAGCCGATGTTTGCCGTAT
GATGGGCACAAACTGGCTAACTTCCATCATTCATGAATTTTGGGCTGATTCCTGGTGGGG
AAGATGGCTAAGATGACGGCCACATGGCATTTGCTGGGACGTGGTGTATAGTAAGCAGGA
TGATGATATTGTAATTAATTGTTATTCTTGTAGTATGCCCTTCCGACGGTTGTAGCAGTT
GGGAGGTCCACGACAAACATTTATCCTTGGCATTGGTAGTAAAAAAACAACAAAAACGGT
CGAGGGGGGGC

Homology of Contig U35_19393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g45980.1	724	protein\|toprim domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g32410.1	712
Arabidopsis v10	AT1G30680.1	709	toprim domain-containing protein \| chr1:10881665-10886060 FORWARD LENGTH=709