barSeed - Barley Seed Development Database

Probe CUST_15829_PI390587928

Source Contig U35_19394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15829_PI390587928	Hv_44K_v2	CTGCGTCTAGGGTCCATCAATTTGTCCTGTGGAAACATTTCAGTCCATCAATTTGAGAAA	947	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78754.1	1114	2e-24	25 - 84	100	60 / 60	minus	ABC11112 ABC45979
JLOC1	JLOC1_52484.1	1195	8e-25	986 - 1045	100	60 / 60	plus
Harvest21	ABC11112	1016	3e-25	948 - 1007	100	60 / 60	plus	ABC11112
Harvest21	ABC45979	365	6e-22	51 - 110	97	58 / 60	minus	ABC45979
Harvest35	U35_19394	1016	3e-25	948 - 1007	100	60 / 60	plus
Harvest35	U35_40941	576	1e-23	469 - 528	98	59 / 60	plus
Harvest35	U35_46219	365	6e-22	51 - 110	97	58 / 60	minus

Contig Sequence (1016 bp)

>U35_19394 1016 Hv_44K_v2
ATCTGATGGAAAGTCACTTATGATCGCAGTATTTGTTCTTATTGTTCTCGCTGATTACTT
GCTGCTCTTCTTTGCTGTTGAGTTGATTGATTACCTGGCCAATTATAGGAGTAGACTATG
TGCAAGCAGAGGATTTCCTTTCCCCTTTGTTATGCAGTGTGATTTTGCTCTACTTCGCTG
GAGGAAAGAGCTCGATTAGTCCGTTGGAGAGTAACCAATCGTTGAGGCTCTGCTCTGGAT
TCGCTTCCTCCAAGTGGCGAGCTATTTCAGAGGGCAGCGGCTGGAGCCTTCTTCGGATGC
CCCCCGGCCCGGTTACCGGAGGGACAGGGGCGGGCGCAAGCGGCTGACGGCGCAGAAGAG
GAAGGAGATCAAGGAGGCCTTCGACCTCTTCGACACCGATGGCTCCGGCACCATTGATCC
AAGGGAGCTCAACGTTGCAATGAGAGCTCTGGGGTTTGAGATGACGCCGGAGCAGATCCA
GCAGATGATCGCGGAGGTGGACAAGGACGGCAGCGGGACGATCGACCTGGACGAGTTCAT
ACACATGATGACGGACAAGATGGGCGAGAGGGACGCCAGGGACGAGCTCCACAAGGCCTT
CCGGATCATCGACCAGGACGCCAACGGGAAGATATCGGACATGGACATCCAGCGGCTGGC
CATCGAGGCCGGCGAGCACTTCACGCTCGACGAGGTCAGGGAGATGATCGAGGCCGCCGA
CGAAAACGGTGACGGCGAGGTCGACATGGAGGAGTTTATGAAGATGATGAAGCGGACGGG
CTTCGGTGCCGGATTCTAGAAGTAGAAGTGATGAGCAGAGGACAAGTGCGGGGTGGAAGG
AGTGCCAAGCACTGGGCCGACAGAGTTAGTCGGTTGTACTGTACATGTGCCTACCAGACC
ATGCTGCGTACGTGCATGTAGTTTCGCATGTTTGCACCTGTGGTAAACTGCGTCTAGGGT
CCATCAATTTGTCCTGTGGAAACATTTCAGTCCATCAATTTGAGAAAAAAAAAAAA

Homology of Contig U35_19394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g25010.1	192	8e-91	protein\|OsCML8 - Calmodulin-related calcium sensor protein, expressed
Brachypodium v1_2	Bradi3g23240.2	179	2e-94
Arabidopsis v10	AT3G50360.1	169	5e-68	\| Symbols: ATCEN2, CEN1, CEN2 \| centrin2 \| chr3:18674421-18675502 FORWARD LENGTH=169