barSeed - Barley Seed Development Database

Probe CUST_15828_PI390587928

Source Contig U35_33688

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15828_PI390587928	Hv_44K_v2	GACATGCTGACAGTTTACAGAATGTACAGCGAGCTTGTATCAAGCACTATTGCATAAGGC	5	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.226	0.978	1.670	1.133	0.686	0.623
Raw	75.020	80.404	141.067	135.572	31.530	31.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_54181.2	3876	6e-21	2144 - 2196	100	53 / 53	plus
JLOC1	JLOC1_54181.1	2731	6e-21	999 - 1051	100	53 / 53	plus
Harvest35	U35_33688	349	3e-25	6 - 65	100	60 / 60	minus

Contig Sequence (349 bp)

>U35_33688 349 Hv_44K_v2
TGGGGGCCTTATGCAATAGTGCTTGATACAAGCTCGCTGTACATTCTGTAAACTGTCAGC
ATGTCGAGGAAGATCAGTGAAATTTGTGGGAAAAAGTGTGGTCCAAGCGAAGTCGCAACA
CTTGTGTTTGTCTGCAAAATGTTAAGAACAGATCTGATAACATCTTGGTTCTTGAGGATA
TCAATGCTTTGGCCTGCCTGTCCAATTATTTCTGCCCATTTCTGATTAGGAAGGCTCATC
AATCTCTTCAGGTATTCGTCCCTCTTAGTACTGTCAGATTCAGCTTGAATCATGTGACCG
ACCGATTCATAAAAGGTATGAATCTGATGTGGCTCTAGATCAAGAATTG

Homology of Contig U35_33688 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64080.1	2075	4e-64	protein\|retrotransposon protein, putative, Ty1-copia subclass, expressed
Brachypodium v1_2	Bradi1g00887.1	1075	5e-66
Arabidopsis v10	AT3G03110.1	1076	7e-52	\| Symbols: XPO1B, CRM1B \| exportin 1B \| chr3:708966-716879 FORWARD LENGTH=1076