- Probe CUST_15820_PI390587928
- Source Contig U35_13764
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_15820_PI390587928 | Hv_44K_v2 | TCCGCCACCAACTGAAGCTGCAGCGCATCGACTCCTTCATGCGCTACCGGGATACTCTCC | 304 | GeneList: plum1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.224 | 0.216 | 0.698 | 1.275 | 1.447 | 1.663 |
Raw | 207.738 | 303.950 | 901.962 | 2402.887 | 1009.883 | 1270.613 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_67948.2 | 1553 | 2e-24 | 668 - 727 | 100 | 60 / 60 | plus | ABC00599 |
JLOC1 | JLOC1_44914.1 | 1227 | 8e-25 | 668 - 727 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00601 | 460 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00599 | 645 | 3e-25 | 334 - 393 | 100 | 60 / 60 | minus | ABC00599 |
Harvest35 | U35_13764 | 461 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus | |
Harvest35 | U35_13763 | 645 | 3e-25 | 253 - 312 | 100 | 60 / 60 | plus |
Contig Sequence (461 bp)
>U35_13764 461 Hv_44K_v2 GCACAGGCTCAGGGTGAGCACGAGCACGTGCACATGGAGAGGAGCATGTCGGAGGCGGCG GCCGAGGCCGAGCTGCCGCGGCTCCCGGCGCGGCTGCGCAAGTCGGCCAGCGACAAGTCG GCGTTCGCGCACTTCGTGGCCGAGGAGGACACCGAGGTGGTGGAGGCGCGCAGGCCCGCG ACGACGAGGGACGGGGACCGCCGCCGCCCCCTGGCGGCGGAGCCGGAGGAGCCGGTGTCG GAGGAGGAGATCGAGGAGGCCGGCGGCGAGGTGGACGCGCGCGCCGACGACTTCATCAAC AAGTTCCGCCACCAACTGAAGCTGCAGCGCATCGACTCCTTCATGCGCTACCGGGATACT CTCCGCCGCGGCCAGGCGACGGCCGTGGCGGGCGCCGAGAAGTANAACCAATCCGGACGG AGAGACTCAGGTCAGGGGGGCTAGATGCAAGAACGACAAGA
Homology of Contig U35_13764 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |