barSeed - Barley Seed Development Database

Probe CUST_15815_PI390587928

Source Contig U35_13769

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15815_PI390587928	Hv_44K_v2	GTTAATTTGCCTCTCGATATGCACTTTACTGCTCCAGTAGATTATTCTAAAGCTACTTAA	1443	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.302	4.552	1.176	0.801	0.229	0.348
Raw	240.165	347.422	72.253	86.522	7.442	12.365

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58958.1	969	9e-22	876 - 933	98	57 / 58	plus	ABC01192 ABC26813 ABC52628
JLOC1	JLOC1_38333.1	1871	1e-23	1581 - 1638	100	58 / 58	plus
Harvest21	ABC26818	458	2e-22	397 - 454	98	57 / 58	plus
Harvest21	ABC26813	476	2e-22	284 - 341	98	57 / 58	plus	ABC26813
Harvest21	ABC01199	537	2e-22	357 - 414	98	57 / 58	plus
Harvest21	ABC01196	861	2e-22	124 - 181	98	57 / 58	minus
Harvest21	ABC01192	1606	2e-22	1444 - 1498	100	55 / 55	plus	ABC01192
Harvest35	U35_13769	1606	3e-25	1444 - 1503	100	60 / 60	plus
Harvest35	U35_28131	476	2e-22	284 - 341	98	57 / 58	plus
Harvest35	U35_13876	537	2e-22	357 - 414	98	57 / 58	plus
Harvest35	U35_13805	713	2e-22	533 - 590	98	57 / 58	plus

Contig Sequence (1606 bp)

>U35_13769 1606 Hv_44K_v2
CATCCAAACCTCCACCCCACACCTCATATCTCCTTGTGCCACCCATTCAAATATGAGTCC
AGTGGTCTCAACGAAGCAGAGAGGATAGCTAGCATCTTGAGCTTGAGGTCAGTGGCAAGC
AAGGAACGAAGGAAGAACAACAAGAAGAAGAAAGGACATGGCATCTGCTACTCTCCTCAA
GTCCTCCTTCCTCCCCAAGAAGGCCGAATGGGGCGTCGCGCGTCAGGTCGCCGCCCCCAG
GGTGTCCATGGTCGTTCGCGCCGGCGCCTACGACGATGAGCTCGTCAAGACAGCGAAAAC
CATCGCGTCGCCGGGGCGCGGCATCCTGGCCATGGACGAGTCCAACGCCACCTGCGGGAA
GCGCCTCGACTCGATCGGCCTGGAGAACACGGAGGCCAACCGGCAGGCGTTCCGCACGCT
GCTGGTCTCCGTACCTGGCCTCGGCAACCACATTTCCGGCGCCATCCTCTTCGAGGAGAC
GCTCTACCAGTCCACCGTCGACGGCAAGAAGATTGTCGACATCCTGGCAGAGCAGGGCAT
CGTGCCCGGGATCAAGGTGGACAAGGGCCTCGTGCCGCTCACCGGCTCCAACGACGAGTC
TTGGTGTCAGGGCCTCGACGGCCTCGCCTCCCGGGAGGCCGCCTACTACCAGCAGGGCGC
CCGCTTCGCCAAGTGGCGCACCGTGGTCAGCATCCCCAACGGCCCCTCCGAGCTCGCCGT
CAAGGAGGCCGCCTGGGGCCTCGCCCGCTACGCCGCCATCTCGCAGGACAACGGCCTGGT
GCCCATCGTGGAGCCGGAGATCCTGCTGGACGGGGAGCACGGCATCGGGCGCACCTTCGA
GGTGGCGCAGAAGGTGTGGGCCGAGACATTCTACCAGATGTCCCAGAACAACGTCATGTT
CGAGGGCATCCTGCTCAAACCCAGCATGGTCACCCCTGGCGCTGAGTGCAAGGACAGGGC
CACGCCGGAGCAGGTGGCCGACTACACCCTCAAGCTCCTCAGCCGCCGCGTGCCGCCCGC
CGTCCCGGGCATCATGTTCCTGTCGGGAGGGCAGTCCGAGGTGGAGGCCACGCTCAACCT
CAACGCCATGAACCAGGGGCCCAACCCGTGGCACGTCTCCTTCTCCTACGCCAGGGCGCT
GCAGAACACGTGCCTCAAGACGTGGGGTGGCCGGCCGGAGAACGTCAAGGCGGCGCAGGA
GGCGCTGTTGCTGCGTGCCAAGGCCAACTCGCTCGCGCAGCTCGGAAAGTACACCAGCGA
CGGCGAGGCCGCCGAGGCCAAAGAGGGCATGTTCGTCAAAAACTACAGCTATTAATCGAA
CCATTCCAATCAACACTACTACGTACGTTCCTTACCAAGCAGAAAGATGCATCATATATC
GATCGAGCTGGGAGCCTGAACCTGAGATGATGATTACTGTATTTTCTAGATCCTTTTTTA
CACGTTAATTTGCCTCTCGATATGCACTTTACTGCTCCAGTAGATTATTCTAAAGCTACT
TAAAAAAAAAAAAAAAATGGATTTGCATGGTTACTGCAAAATTTTGGTACTTGTCCCTAA
AGACAAATATAATAAGATATAGTTAGCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13769 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g07020.1	389	protein\|fructose-bisphospate aldolase isozyme, putative, expressed
Brachypodium v1_2	Bradi4g24367.1	389
Arabidopsis v10	AT4G38970.1	398	\| Symbols: FBA2 \| fructose-bisphosphate aldolase 2 \| chr4:18163714-18165659 REVERSE LENGTH=398