- Probe CUST_15808_PI390587928
- Source Contig U35_25748
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15808_PI390587928 | Hv_44K_v2 | CTCCCCTTTGTTTTACAATGGATACTTCTTACACTGGAATGGAACTTTTTGGAAGATTTA | 395 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.219 | 2.301 | 1.068 | 0.873 | 0.341 | 0.448 |
| Raw | 648.846 | 1065.619 | 433.975 | 561.741 | 76.256 | 108.193 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71683.1 | 2246 | 2e-24 | 2185 - 2244 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_71683.2 | 1619 | 6e-24 | 1 - 59 | 100 | 59 / 59 | minus | None |
| JLOC1 | JLOC1_47657.1 | 2102 | 8e-25 | 1997 - 2056 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25748 | 455 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus |
Contig Sequence (455 bp)
>U35_25748 455 Hv_44K_v2 GGATATCATTGCCTACAATTTCGAGATGTTTGCGGACATAAGAGAGTTCAGGGCTTTGCT CTTGACACTCCCACCGCCATCTGCAAACGACGCACTACGAACGACTCGTCCCAGCCAGCC CGGGGCTGCGGGGAACACTGACCAAGGCAATATTCTCGATGACTTGCGTGAGAAATGGTT GGAAGCAGAGGCTGCTGAGCTAGACAAGAGAGATCAGAGTGCAGCGCTGTTTGACCGGCG ACTGGAGATGCTTATGCTCGTTGCGGAGCGGGAAGCCTGTGGTGATGACAATACTGCCCT CCACTGAGAACTGGAACTTCATACCTTTCTTGTGTAGCTCTTCCTTTTGTAGTCTTCGCT GTAAGGGGCTGATGTAGAATTTCTGTATTATATGTCTCCCCTTTGTTTTACAATGGATAC TTCTTACACTGGAATGGAACTTTTTGGAAGATTTA
Homology of Contig U35_25748 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |