- Probe CUST_15807_PI390587928
- Source Contig U35_25749
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15807_PI390587928 | Hv_44K_v2 | CGGAGTGCGGTGGACGGACGGACGGCTAGAGGTGCTGCTGCCATTGTTGTTGTTAAAAAA | 250 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.182 | 1.246 | 1.133 | 0.930 | 0.562 | 0.573 |
| Raw | 277.125 | 446.084 | 369.437 | 464.238 | 98.082 | 111.440 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362446 | 2571 | 2e-24 | 2497 - 2556 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_62710.1 | 959 | 2e-24 | 789 - 848 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_62710.2 | 1477 | 2e-24 | 1044 - 1103 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_41059.2 | 927 | 8e-25 | 726 - 785 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41059.1 | 1275 | 8e-25 | 1021 - 1080 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25749 | 439 | 3e-25 | 251 - 310 | 100 | 60 / 60 | plus |
Contig Sequence (439 bp)
>U35_25749 439 Hv_44K_v2 GGAGGAGGAGGAGGCGGGGGAGGCGANCCGCTGACCCCAACGTCGGCGTGGCGCGCGGCG GAGCAGCTGGCCAAGGTGACCATCATGCGCAAGTCCATGAACCGGGTCAGCGACCTGCAC GGCTTCGAGAACGCGCGCTTCTGACGACGGCGACGGCGAGGAACGACGATCGACGGAGCT CCATGATCTTTGTTTTGTTTTTTTTGGTTTGGTTTTGTGAAATCGGACGTGAAGAAGAAG AAGACCCTGCCGGAGTGCGGTGGACGGACGGACGGCTAGAGGTGCTGCTGCCATTGTTGT TGTTAAAAAAAAGAGTAGCAAGTGAAATACTAGGATCTGCCATGATATTGCTTTTTTTTT TTCCTTTCATTTCCTTTCCTTCTTGTTAATTAATTAATTATAAGACTTGATTCATTCTTG CTAAAAAAAAAAAAAAAAA
Homology of Contig U35_25749 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |