- Probe CUST_15798_PI390587928
- Source Contig U35_13771
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15798_PI390587928 | Hv_44K_v2 | TGTCCCGTTGTACAATTCAATCGCTGTCGAATACTGTAATGGAATGCAATATATGGGCTG | 459 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.172 | 0.264 | 1.079 | 2.478 | 1.186 | 1.140 |
| Raw | 31.638 | 83.986 | 281.706 | 998.326 | 172.221 | 178.084 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252811.1 | 578 | 2e-24 | 476 - 535 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_54642.1 | 641 | 3e-21 | 417 - 476 | 97 | 58 / 60 | minus | None |
| JLOC1 | JLOC1_35177.1 | 2101 | 2e-21 | 1877 - 1936 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_13771 | 542 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus |
Contig Sequence (542 bp)
>U35_13771 542 Hv_44K_v2 AGTTCAGCAACACTTCTTTACTAAACCTCTTGTTCAGTTCCAACGACCATCGCCACACAC AGAGAGAGGGAGAGAGAGTGTGTGTGTGTGTTGAAGAAAAGAAAGATGAAGCTTATGGGA AGGAGACAGGGGGGAGGAGGAGGGTTGAGCCGGAGCCTCAAGGAGCACAGGGCCAGGCTC TACATCATCCAGCGCTGCGTCGTCATGCTCCTGCGCTGGCACGACTGACTCACACCCTCC CTCCATGGATTCCATGGACGCATGGTGTTTTAGATTTTTGGGTCTGTGATTGTGCTGTGC CAGAATGGTGTCGGCATGCAGGTCGTACTTGTACATAAGAGGCAAGTTGATTATACAAGT AGAAGTAGCAGCAACGCAAAGCAATATATTAGGATCCACGGTAGTGTTCATTGATTCACC GCTTCCCTCTGCCCTCCATCCCCTTCGTTCCGTCAAGTGTGTCCCGTTGTACAATTCAAT CGCTGTCGAATACTGTAATGGAATGCAATATATGGGCTGAAAAAGAAAAAAAAAAAAAAA AA
Homology of Contig U35_13771 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |