barSeed - Barley Seed Development Database

Probe CUST_1578_PI390587928

Source Contig U35_30221

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1578_PI390587928	Hv_44K_v2	ACTCGATCCACTGAACGAACTGAAGCGCCTTGGCCCGTGTGTGTCGAAGTACGTACGTCT	392	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.512	0.725	0.469	1.390	1.537	2.297
Raw	673.311	1641.474	892.753	4508.913	1578.270	2608.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356588	2841	2e-24	2525 - 2584	100	60 / 60	plus	ABC01689 ABC43248
MLOC	MLOC_70736.1	898	2e-24	642 - 701	100	60 / 60	plus	ABC01689 ABC43248
MLOC	MLOC_70736.2	776	3e-22	375 - 430	100	56 / 56	plus	ABC01689 ABC43248
JLOC1	JLOC1_46957.1	1062	8e-25	600 - 659	100	60 / 60	plus
Harvest21	ABC01689	791	3e-25	430 - 489	100	60 / 60	plus	ABC01689
Harvest21	ABC01688	703	3e-25	393 - 452	100	60 / 60	plus
Harvest35	U35_30221	458	3e-25	393 - 452	100	60 / 60	plus
Harvest35	U35_14498	816	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_30221 458 Hv_44K_v2
CTCAAGCCAGCGCCACTCACACCACGCTCGTCCACTCAAGCTAGCTAGCGCCGTAGTTCA
CTTCAGTCCAGTCGGCATGGCGGCTCCGAGGGGTGCGGCACTGGTGCTGGCGATGGTGCT
CGCGGCCATATCGTGCTCGGCGGTGTACAGCACGCTGATGCCGTGCCTGCAGTACGTGCA
GCAGGGCGGGACGCCGGCCCGGGGCTGCTGCGCCGGCATCCAGAACCTGCTGGCCGAGGC
CAACAACAGCCCCGACCGCCGCACCATCTGCGGCTGCCTCAAGAACGTCGCCAACGCCGC
CCCCGGCGGGAGCGAGATCACCCGCGCCGCCGCGCTCCCGTCCAAGTGCAACGTCAACCT
CCCCTACAAGATCAGCCCCAGCGTTGACTGCAACTCGATCCACTGAACGAACTGAAGCGC
CTTGGCCCGTGTGTGTCGAAGTACGTACGTCTGCCCTG

Homology of Contig U35_30221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g53570.1	122	2e-52
Arabidopsis v10	None