barSeed - Barley Seed Development Database

Probe CUST_15784_PI390587928

Source Contig U35_49707

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15784_PI390587928	Hv_44K_v2	TTTGGACATTCCTATTGACGTTGCACTGAACTTACATGCTTTCAGGATCTCTAAGTTATG	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251601.1	1302	2e-24	650 - 709	100	60 / 60	plus	ABC01481 ABC01482 ABC42385 ABC42763
MLOC	MLOC_14056.2	1396	2e-24	420 - 479	100	60 / 60	minus	ABC01481 ABC01482 ABC42385 ABC42763
JLOC1	JLOC1_9570.2	2559	8e-25	1762 - 1821	100	60 / 60	plus
Harvest21	ABC51575	621	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_49707	621	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_49707 621 Hv_44K_v2
TGATTGAGGAGGTCGAATATCAGTCCCGCCGGCGATCAGATCGCCACGGCCACAATAACC
ATAGGAAACCTAGGCACATCGTCGTCCCCGCTCGCAGTTTCTCCTTGGCGCCGCCGTCCA
TCTGACTGCTCCGTAAGCCCGCGCTTCAGTGGAGATGCAGAGGACGGTGGATTTCAAGCT
CCCCCACTTCTTCAACTACCCACCCTACTTTACTTTGCAGCCCGTGAGAGAAACACGCGA
AAAGCAAGTGCAGCTATGGAAAGAGCTGATACTTGATTACTGTAGAAGTCAAAAGATGTA
TATAATCTCCCTGGAAGAAGATTTTCCGTTGTTTTCCAATCAAAAGATTGAGAGTAAGCT
GTATTTGTCTGAACCTTGTGTTTTGACTACTACTCTTCTGCAATTCAGCAAAAGTATGTC
TTAACTGTGTTGAAAGTATTATGACATAGTGAACTGGCGTGATGGTAATGTGTTCCTAAG
GTCTACCATGGAGCCTTTTGAGCATGCTGGACTAGTGTATACATGAAAATTTTATTTACT
CGACTAGTTTACAATGCATTTGGACATTCCTATTGACGTTGCACTGAACTTACATGCTTT
CAGGATCTCTAAGTTATGAAG

Homology of Contig U35_49707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None