barSeed - Barley Seed Development Database

Probe CUST_15783_PI390587928

Source Contig U35_13779

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15783_PI390587928	Hv_44K_v2	CTGTTTTTTACTCCGATTCGCACTGTCGGCAGTTGGCCAGTAAACTGCATTTTTCTGAAA	669	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47846.1	621	2e-24	332 - 391	100	60 / 60	plus	ABC00159 ABC00500
JLOC1	JLOC1_30795.1	445	8e-25	332 - 391	100	60 / 60	plus
Harvest21	ABC00159	746	3e-25	673 - 732	100	60 / 60	plus	ABC00159
Harvest35	U35_13779	743	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_13779 743 Hv_44K_v2
GAGGGCGGCTCCAAATCTCTCCTGCTAGGCAGCTTCCACCTCCTCTCCGACGATGTCTGG
GCGTGGCAAGGGCGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCT
CCGTGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTCGCGAGGAGGGGCGG
CGTGAAGCGTATCTCCGGGCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGATCTTCCT
CGAGAACGTCATCCGCGACGCCGTTACCTACACCGAGCACGCCCGCCGCAAGACCGTCAC
CGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGG
CTGAGCGCCATCGGCGCGCCGGCTCACCTGACTCTGCTGCTTATTGCTTTTCTCTGTAGT
CGTGCTTCCAACTTCTAGTTTGTCTAGTGAGATCCAACTTCTAGTTGTAACTCCTATCGT
TTCGTTTAGCTGGAATGGCAAGTTAATTCCAATCTCAGTAAAACCACCATGTCTGATTCT
AGAAGGAAGGGAAATTGAGTGACAGCTGAAGTTAATTCTTATGAAGTATAGAACTGGAAG
AACACTGCTGGTTTGTTCCCCAGAGTAGCGAAATCCGGCCTCTAGGCGCTTGATGTGTTT
GTCCCTGTTCTGTTTTTTACTCCGATTCGCACTGTCGGCAGTTGGCCAGTAAACTGCATT
TTTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None