barSeed - Barley Seed Development Database

Probe CUST_15782_PI390587928

Source Contig U35_49708

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15782_PI390587928	Hv_44K_v2	AAATGCGGGAATTGGTTCAGAAGTATGGTAAAAGATCATCTGTTGAATCGCGTCCGTGGG	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54480.1	3228	2e-24	2368 - 2427	100	60 / 60	plus	None
JLOC1	JLOC1_35065.1	3228	8e-25	2368 - 2427	100	60 / 60	plus
Harvest21	ABC51576	557	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_49708	557	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (557 bp)

>U35_49708 557 Hv_44K_v2
GCTTGAACCTGCAGAATGGACTGGAGCTGTACCTGTGCCCTCCTCAGGGGGAAACTGTGG
AGATTCTGTCCCAGCACCTGCCGAAGGAGCACTTGGGTGGTTTAGCTGTGGCCGAAACGT
CGATCATTGGGATCGTCGTCTGGCGGAGACCCAGCGTTCCTAGGGCGTCCTCCCATCAGA
GGCATGATGGTTCCAAGAGGCAGTCGGCCCCATGGAAACCCCAGGTCACTGGTTCTACTT
CGGCCCATAGGCCCTCCGCGCCCCAGAACTCCCATGGCGGGCCACCAGGTTTTCCCAGCC
AGCGCCACCACCAGCACCAAGAGGAGGATGTAACCGATGACGATGTGCCCCCAGGGTTTG
GGCCTGGTGTTGTTGCCCGCAGGGACGAGGACGATCTTCCCGAATTTAATTTTGTTAACC
CCGCTGCTAATGTAACATTGCATGCCTTCAAGGGCCAACGGCGTGTAGCACCGACCTCTG
CTCGCCCAGTAGAGCAAATGCGGGAATTGGTTCAGAAGTATGGTAAAAGATCATCTGTTG
AATCGCGTCCGTGGGCT

Homology of Contig U35_49708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g11780.1	1120	1e-78	protein\|transcription factor S-II, central domain containing protein, expressed
Brachypodium v1_2	Bradi3g07877.1	1094	3e-85
Arabidopsis v10	None