barSeed - Barley Seed Development Database

Probe CUST_15765_PI390587928

Source Contig U35_13780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15765_PI390587928	Hv_44K_v2	GGGATGGAATGGGTCTTAACGGAAAATGGGACTATTAGTCACATGGTTACGCTGAAAAAA	1312	GeneList: thistle2 MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.257	0.803	3.006	1.490	1.096	0.972
Raw	28.495	157.170	471.250	357.828	96.177	91.805

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66485.3	3640	7e-23	3456 - 3516	98	60 / 61	plus	ABC01861 ABC01864
MLOC	MLOC_66485.2	4135	7e-23	3984 - 4044	98	60 / 61	plus	ABC01861 ABC01864
MLOC	MLOC_66485.4	1010	3e-22	955 - 1010	100	56 / 56	plus	ABC01861 ABC01864
MLOC	AK369526	4491	3e-21	4438 - 4491	100	54 / 54	plus	ABC01861 ABC01864 ABC04659
JLOC1	JLOC1_43816.1	1604	4e-23	1437 - 1497	98	60 / 61	plus
Harvest21	ABC01861	1374	3e-25	1304 - 1363	100	60 / 60	plus	ABC01861
Harvest21	ABC01853	632	6e-22	576 - 632	98	57 / 58	plus
Harvest35	U35_13780	1421	3e-25	1313 - 1372	100	60 / 60	plus

Contig Sequence (1421 bp)

>U35_13780 1421 Hv_44K_v2
CCCGCGCAAGCGCACTCTCTCGCTCTCTAGCCGCGCAGCCGATACAAATCGTGCGTGCCG
GCGTCAGTCACGCCACGCACGGTGCGCGTCCACGCCGAGCGGAGCGGAGCTGAGCAGAGC
AGGGCTTTGCTCGACCGGCAATGGCGGGAGCCTGCTCGTGCGCCGGCCTCCTGGCGCTGT
TCGTGCTCGCGTGCATCGCCGACGCCGCGACCGCGCAGCTGCGGCAGAACTACTACGCCA
CCAGCTGCCCCAGCGCCGAGTCCACCGTGCGCTCCGTCATCTCGCAGCACGTCCAGCAGA
GCTTCGCCGTCGCGCCAGGCACGCTCCGCCTCTTCTTCCACGACTGCTTCGTCCGGGGGT
GCGACGCGTCGGTGATGCTGATGGCGGCGAACGGGGACGACGAGAGCCACAGCGGCGCGG
ACGCCACGCTGTCGCCCGACGCCGTGGAGGCCATCAACAAGGCCAAGGCCGCCGTCGAGG
CGCTGCCCGGGTGCGCCGGCAAGGTCTCCTGCGCCGACATCCTCGCCATGGCCGCGCGCG
ACGTCGTCTCCCTGACCGGCGGGCCGAGCTACGGCGTGGAGCTGGGACGGCTGGACGGCA
GGTCGTTCAGCAAATCCATCGTGAAGCACGTCCTCCCGGGCCCCGGCTTCGACCTCAACC
AGCTCAACGCGCTCTTCGCCACCAACGGCCTCACCCAGTTCGACATGATCGCGCTCTCCG
GTGCGCACACGATCGGGGTGACGCACTGCGACAAGTTCGTGCGCCGGATCTACACGTTCA
AGCAGCGACTCAAGTACAACCCGCCGATGAACCTCGACTTCCTGCGGTCGCTGCGCAAGG
TGTGCCCCATGAACTACCCGCCCACGGCGTTCGCCATGCTGGACGTGACCACGCCCAAGA
CCTTCGACAACGCCTACTTCGACAATCTCCGCTACCAGAAGGGCCTGCTCGCCTCCGACC
AGGTGCTCTTCACCGACCGCCGCTCCCGCCCCACCGTCAACCTCTTCGCCGCCAACTCCA
CCGCCTTCTTCGACGCCTTCGTCGCCGCCATGGCCAAGCTGGGACGGATCGGGGTCAAGA
CCGGCAGCGCCGGCGAGGTGCGCCGGGTCTGCACCGCCGTCAACTAGCTTTCTATTTCGG
TCGTGTGTGCGTGTGCGTGCGCGTGCGTGTGGGTTAGCCTGGGTCGGTAGGGTCGTGAAT
TACTTGTGATGCAGCGCAGATGCAGGGTGTTTTTGCTCGCGTGTGTGCGTTAGTGTGCTC
ATACGCTACGTTTTGTGGTGGGATTATGTTAACCATTCTTTGATCGGGATGTGGGATGGA
ATGGGTCTTAACGGAAAATGGGACTATTAGTCACATGGTTACGCTGAAAAAAAAAAAAAA
ACTCTGCTTTTGTGTGGCAGTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56180.1	338	0.0	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g24650.1	343	0.0
Arabidopsis v10	AT4G30170.1	325	5e-111	Peroxidase family protein \| chr4:14762922-14764482 FORWARD LENGTH=325