barSeed - Barley Seed Development Database

Probe CUST_15761_PI390587928

Source Contig U35_13783

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15761_PI390587928	Hv_44K_v2	TTTACCAGGAGCCTCGGATGAATCGTACTTGTTTGCAGGCTAATTTGTAATGTGAAAAAA	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2265.1	390	2e-24	81 - 140	100	60 / 60	minus	ABC00117
JLOC1	JLOC1_1360.1	367	8e-25	62 - 121	100	60 / 60	minus
Harvest21	ABC00117	674	3e-25	589 - 648	100	60 / 60	plus	ABC00117
Harvest35	U35_13783	677	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_13783 677 Hv_44K_v2
GAGGCCGCCACATCCGCTCGCAGCTCCAGATCGTCGTCAGCCATGTCCGGGCGCGGCAAG
GGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACAGGAAGGTCCTGCGCGACAAC
ATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGCGGAGGGGCGGCGTGAAGCGC
ATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTC
ATCCGCGACGCCGTCACCTACACCGAGCACGCCCGTCGCAAGACCGTCACCGCCATGGAC
GTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGGCCGC
CCGATGGCCGCCAGTGTCTGTCGCCGCCTGCAGATTTCAAAAGCTCGATGAAAACCTCGA
CGTGTTTAGTTCAGTATTTCCTCTGTAGTTCGAACTGAATCATGGAGCACATATCTTGTT
GGAAATGAAACCTGTCTCTGTGCAAAAAAAAAAAAAAAAATTTTCTCTTGCTTGTTGCTC
TCTGTTGGGTTGGGTACGATATTGAGGTGGAGACGAGTTGATTTGCCATGATTTACCAGG
AGCCTCGGATGAATCGTACTTGTTTGCAGGCTAATTTGTAATGTGAAAAAAACGCCACAG
GGACTGAACAAGCATTT

Homology of Contig U35_13783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None