barSeed - Barley Seed Development Database

Probe CUST_15760_PI390587928

Source Contig U35_13784

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15760_PI390587928	Hv_44K_v2	CTTTGATCAGTTGCTGTATCTTTGCATGAACTAATGCAATTCTGATGAATTGCGTTCTCT	966	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.773	1.397	1.311	0.834	0.228	0.246
Raw	2744.327	3390.188	2780.087	2750.756	265.236	315.263

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48870.1	1625	3e-21	267 - 326	97	58 / 60	minus	ABC02634 ABC29477
JLOC1	JLOC1_31334.1	1809	2e-21	312 - 371	97	58 / 60	minus
Harvest21	ABC02634	1036	3e-25	953 - 1012	100	60 / 60	plus	ABC02634
Harvest35	U35_13784	1050	3e-25	967 - 1026	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_13784 1050 Hv_44K_v2
CAGGCGGAGGGGGACGAGGTAAGAAGCAGCAGCCGCAGCGCGACCCCGCGAGGAAACCCT
ACCGCCGCCGCCGCAGAAGCAGCCATGGGTATCGACCTCGTCGCTGGCGGGAGGAACAAG
AGGACCAAGCGCGTCGCGCCCAAGTCCGACGATGTGTACCTCAAGCTCCTCGTCAAGCTC
TACCGTTTCCTGGTGAGGAGGACCAAGAGCAAGTTCAACGCCGTCATCCTCAAGAGGCTC
TTCATGAGCAAGACCAACCGCCCGCCGCTCTCCATGCGCCGTCTCTCCAACTTCATGAAG
GGAAAGGAGGAGAAGAACATTGCTGTGGTTGTTGGCACAATCACAGATGACATGCGGATC
CAAGAGATCCCAGCAATGAAGGTTACCGCTCTGAGGTTCACAGAGACAGCGAGGGCAAGG
ATTGTCAATGCTGGTGGGGAGTGCCTCACTTTTGACCAGCTTGCTCTCCGTGCTCCAACT
GGGGAGAACACGATCCTGTTGAGGGGACCCAAGAATGCCCGTGAGGCGGTGAGGCACTTC
GGCAAGGCTCCTGGTGTGCCGCACAGCCACACCAAGCCCTATGTGCGCTCCAAGGGTAGG
AAGTTTGAGAAGGCTCGTGGTAGGAGGAACAGCCGTGGCTTCAAGGTTTAAGTTGCCCTT
TCTGGTTAGTCGCTGTTTGCGTGGAGCGGCTGTTGTTCTGTTTGAGCAATTGACAGTAAT
TAGTAAAGTACTTAGTACTGAGAGCAGCACAATCTATCGCCCCAGTGTTCGAATGATATT
TTGGAAGATTCTTATGGCTGTCAACTGTTTTTATTTTGTGAGCTTGAAGACCATGTTTTG
TTGCAAAAAAAAAAAAAAAAAACCTGTCTCTTAGAATTCTCTGCTGGCAATGTCTACTGC
TGAATGTGTTCTCTCTAAAAAAAAAAAAAAAAAGTTGGTTCTCTTTGGTGCCTTGGGCTC
TATCCTCTTTGATCAGTTGCTGTATCTTTGCATGAACTAATGCAATTCTGATGAATTGCG
TTCTCTTGCTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06310.1	189	2e-120	protein\|60S ribosomal protein L18-3, putative, expressed
Brachypodium v1_2	Bradi2g35090.1	189	2e-124
Arabidopsis v10	AT3G05590.1	187	1e-104	\| Symbols: RPL18 \| ribosomal protein L18 \| chr3:1621511-1622775 FORWARD LENGTH=187