barSeed - Barley Seed Development Database

Probe CUST_1575_PI390587928

Source Contig U35_30224

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1575_PI390587928	Hv_44K_v2	GTCTTTTTTCATGCATGGTGGCATGTGTGCATGTTGAGATACATGGGTTAGTGAGGATCA	353	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.310	1.188	1.522	1.013	0.324	0.204
Raw	41.885	56.910	67.624	72.377	6.919	4.034

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39558.1	1731	2e-24	1359 - 1418	100	60 / 60	plus	None
JLOC1	JLOC1_25799.1	1708	8e-25	1342 - 1401	100	60 / 60	plus
Harvest21	ABC30036	416	3e-25	354 - 413	100	60 / 60	plus
Harvest35	U35_30224	416	3e-25	354 - 413	100	60 / 60	plus

Contig Sequence (416 bp)

>U35_30224 416 Hv_44K_v2
GAACAATCAAAATACTTTTGCATACAAACTTTATTAGTGAACTAATAACTTTTGTTCAAA
GCTGTAGTTGGAGAGTCAAAATGTGTCCTATGTTTCAGAACAGAGAGAGCAGTCATATGC
GAAAAATTTAGGAATGCTTAATTTTAGTCGTACATGAGTAATGCAGCATGATTCCTTGTT
TTTCTTTCTTTTGGGCAGACACAGACTTAATTAACTAGATGATATCCCGCACGTTGCTAG
GGGAAATCACAATACATTTGGATAGATTTTGTTGTATGGAACATGAATATTTAATCATAT
GAGGACTAAATTAAAAATATACATGATTTAGTGTATTATAATTATTGAGGTGGGTCTTTT
TTCATGCATGGTGGCATGTGTGCATGTTGAGATACATGGGTTAGTGAGGATCAACT

Homology of Contig U35_30224 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None