barSeed - Barley Seed Development Database

Probe CUST_15753_PI390587928

Source Contig U35_13788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15753_PI390587928	Hv_44K_v2	ATTTGTAATGTGATGAAAACGCCACAGGGACTGAACAAGCATTTGCTCTGTTTCAAAAAA	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40297.1	500	3e-21	266 - 319	100	54 / 54	plus	ABC00576 ABC30671 ABC44723
JLOC1	JLOC1_26337.1	498	2e-21	266 - 319	100	54 / 54	plus
Harvest21	ABC30671	685	3e-25	619 - 678	100	60 / 60	plus	ABC30671
Harvest35	U35_13788	732	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (732 bp)

>U35_13788 732 Hv_44K_v2
CCCATGGCTGAAACTCGAAGGAAGGAGACGAGAGGAGGCACCAGCACCGTTCCTCAGATT
CAACATCCGCTCGCAGCTCGAAGAGGATCAATCGTCAGCCATGTCTGGGCGGGGCAAGGG
AGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACAGGAAGGTGCTCCGCGACAACAT
CCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGCGGAGGGGCGGCGTGAAGCGCAT
CTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCAT
CCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGCAAGACCGTCACCGCTATGGACGT
CGTCTACGCCCTCAAGCGTCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGGCCGTCA
GGCTTTCTCGCAGCCTGCAGACTCCCGAAGCTTGATGAAACCACGACTTGTGTGGTTCGC
TGTTCCCTCTGTAGTTCGAATTGAATCTTGGAGCAAAGTTAATCGCGTATGTCGTTGAAA
AGGAAAAAAAAAAAAAAAAAAAAACCGTGTTCCTGATTTTGCTTCGTTGGTGGGTGGCGA
TGAGTTGGTTTGCCATAATTTGCCAGGAGCCTCGGATGAATTGTACGTACTACTTGTTTG
CAGGCTGATTTGTAATGTGATGAAAACGCCACAGGGACTGAACAAGCATTTGCTCTGTTT
CAAAAAAAAAAA

Homology of Contig U35_13788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None