barSeed - Barley Seed Development Database

Probe CUST_15752_PI390587928

Source Contig U35_13789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15752_PI390587928	Hv_44K_v2	CGATGTACTACTGCTAGCATTAGCATGGAATGGAAATCTCAGCGCTTTGTCCTTAAAAAA	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79788.1	989	3e-21	731 - 784	100	54 / 54	minus	ABC00140 ABC00175 ABC00488
JLOC1	JLOC1_53128.1	380	2e-21	122 - 175	100	54 / 54	minus
Harvest21	ABC00140	578	6e-22	503 - 556	100	54 / 54	plus	ABC00140
Harvest35	U35_13789	574	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (574 bp)

>U35_13789 574 Hv_44K_v2
CCGCACCGCCGCAACAGCACACANCCACAGAACCCAAGCTCGCCGGAGGGAGAAGCCGTC
AACCACCATGTCTGGCCGCGGCAAGGGAGGGAAGGGGCTGGGTAAGGGTGGCGCCAAGCG
CCCCCGGGGAAGGTGCTCCGTGACAACATCCAGGGCATCACGAAGCCGGCCATCCGTCGC
CTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGC
GTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCC
CGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGACAGGGGCGAACC
CTCTACGGATTCGGCGGCTAGTCCGCGCCGCTCCGGTCGGATCCACCTCGCGCCGTCGGA
TTCGTAGCTAGCCATGGTTGTTGTTCAGTCTTCATTGTCTCCGGTGTAACGGAATGGCCG
CATCTCGCTGCTGTCTGTTGTTTCGATGTACTACTGCTAGCATTAGCATGGAATGGAAAT
CTCAGCGCTTTGTCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39410.1	104	3e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g19360.1	104	1e-51
Arabidopsis v10	AT5G59970.1	103	1e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103