barSeed - Barley Seed Development Database

Probe CUST_15748_PI390587928

Source Contig U35_25760

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15748_PI390587928	Hv_44K_v2	AGTTTGGTTCACAACTGACTAAATAATCCTGGGAGCACTTTACCAGTTCACCGTGTAAGC	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3506.9	3990	3e-21	3129 - 3182	100	54 / 54	minus	ABC39582
MLOC	MLOC_3506.1	4871	3e-21	3120 - 3173	100	54 / 54	minus	ABC39582
MLOC	MLOC_3506.6	3346	3e-21	2694 - 2747	100	54 / 54	minus	ABC39582
MLOC	MLOC_3506.3	8693	3e-21	3141 - 3194	100	54 / 54	minus	ABC39582
MLOC	MLOC_3506.4	8522	3e-21	3141 - 3194	100	54 / 54	minus	ABC39582
Harvest35	U35_25760	756	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_25760 756 Hv_44K_v2
CGGGATCACAACCGGGATATGCAACACGCATAACGTGTACCTGCCGATACCGGAAGTTAT
CAAGACGCCAAGGCTTGTCGACCCAAATAGCAGGATGTGGCACAGGTGCTTGACATCCAC
AGGTCAACCTGACTTCTGTTGATCAGTTCACAGTTCTTGACAGCCAAATTTGTGAATGAA
CTTCTAATGCTAAAAGAACCGGTGGTGTACAGCATTGTCAATGTCTTAATTTGTTTTGTC
TTCCATCAGAACGACATCGTATGCCCAGCGGCCGCTAAAGAAACTAGGAATTAAAATGTT
GCGATGGAAACATTCTACAAGGTCCCATAAAGTTTGATTCACCGTCACGGAATTTTGACA
ACAATATGTAAAGTGTGTATGAGACTAACCGAGGTAACCTCAGGTGTTCCAAGAGAGGTT
TCGAGGTCCTGTTCATATGCATTGAGATCATTTGTTTCATAAGCATCCCACACTTTGAGA
TCTTCAGTGTCCTTGAAGTGGACACGCATCTTCTGTGCACTGGCCCTCATGTCGCGCATC
AACTCAGGTGTTCGACTAGACACCTTTTCGAACTGACAGCATTGCCATTCAAACACACCA
TTCCTCATGCCAGATTGGGGGTCATACTTCTGTGAGATGGATAAATGGAAACTGTTACTC
TGAAACAAACTATCCTGAAAAGTTTGGTTCACAACTGACTAAATAATCCTGGGAGCACTT
TACCAGTTCACCGTGTAAGCAGCGGCCGCTCGAGCA

Homology of Contig U35_25760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None