- Probe CUST_15746_PI390587928
- Source Contig U35_25762
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15746_PI390587928 | Hv_44K_v2 | GTTGTCCCTAATTATTCTTGACCTTCAATCAATAAGAACATGAAAATACGGGGGAGAAAA | 286 | GeneList: red MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.496 | 1.773 | 1.207 | 0.842 | 0.402 | 0.339 |
| Raw | 411.202 | 768.935 | 445.327 | 476.693 | 82.343 | 75.758 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC26571 | 359 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus | ABC26571 |
| Harvest35 | U35_25762 | 359 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus |
Contig Sequence (359 bp)
>U35_25762 359 Hv_44K_v2 CCATATCACCGGCGCCGAGTCGCACGAGCAGCAGCGCCGCGACCACCACCCCGAAGAAGA CGACGCCGATGACGACGACGAGCCCGTCTCCGACTCCAGCCCAGAAGACTAACGAAGCAG AGCAAAGCCACGAAAGCACTCCACTGCACGCACTGCAGCCAAAAGTCAATCCAAAGAAAC CTTAGGTTCTATTCTAGTGAAATATTTATTCTCCGATTATGTATTAGTCAGTAATGTTAC CACGATTGCCCCTCTGGAGTGTTTTTTGGTACCATGACTATTGTTGGTTGTCCCTAATTA TTCTTGACCTTCAATCAATAAGAACATGAAAATACGGGGGAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25762 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |