barSeed - Barley Seed Development Database

Probe CUST_15743_PI390587928

Source Contig U35_25765

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15743_PI390587928	Hv_44K_v2	GAATACTGACTGAAAACAGGTGATGGATGGAATCTTACAAAATTTGCAACACAAACCAAA	459	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.301	2.041	1.230	0.832	0.305	0.316
Raw	1323.793	1863.182	979.631	1024.221	133.366	149.163

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365734	2464	2e-23	2399 - 2456	100	58 / 58	plus	None
MLOC	MLOC_72026.3	2167	2e-23	21 - 78	100	58 / 58	minus	None
MLOC	MLOC_72026.1	2197	2e-23	41 - 98	100	58 / 58	minus	None
MLOC	MLOC_72026.2	2588	2e-23	39 - 96	100	58 / 58	minus	None
JLOC1	JLOC1_47909.1	2256	1e-23	2161 - 2218	100	58 / 58	plus
Harvest35	U35_25765	534	3e-25	460 - 519	100	60 / 60	plus

Contig Sequence (534 bp)

>U35_25765 534 Hv_44K_v2
CATCCTCATAAATACATATCTGTTGATAAACCTGGGCGGTGATGCGTGGCTGAGAGTCGG
GATATGGCTGCTGATAGGTATTCTCGTCTACATTTTCTACGGGCGAACCCGCAGCTCGCT
AGTCGACGTTGTGTACGCCCCTGTGGCTAAGGCCGATGCACGCAGGAGTTCATCTGGTTT
CATGTCCTAGAAAAGAACCGTCACACCGTGGAGCTGACAAAACCTCGCCGGCCCTCAGAT
GCGCATAGATGTGCAGCCGGATATCAGCCAGCCCGGAAGGGCCTGTTGAATTGTTGGAGC
CTAGTCGACGACAGGGTCTGATTGATGCAGTTTTTTTGGGGACCGTGCATGAGAATGATC
AGCATACAAAGTAGAGTTTGGATTGGGTGGTGGCGTGTGTGATTGTTTGTAATTCATTCA
TGTATAAGAGGTGAAAAAGCCCCTTGTACTGGAACGGGTGAATACTGACTGAAAACAGGT
GATGGATGGAATCTTACAAAATTTGCAACACAAACCAAAAAAAAATAAAAAAAA

Homology of Contig U35_25765 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None